Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.7e-194 681.8 337 100.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 2.6e-128 462.6 337 65.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.3e-121 439.5 304 66.1
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 6.3e-119 431.4 308 65.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 7.0e-118 427.9 287 70.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.7e-117 426.0 296 67.6
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.0e-116 421.8 282 67.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.1e-115 420.6 300 66.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.2e-114 417.2 327 61.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.2e-114 417.2 290 66.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.2e-114 417.2 322 62.1
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 3.0e-113 412.5 339 60.2
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.0e-113 412.1 279 68.1
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 4.0e-113 412.1 363 57.3
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 5.2e-113 411.8 247 73.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.4e-112 409.1 308 63.0
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.7e-112 408.3 307 62.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.5e-112 407.9 285 66.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.5e-112 407.9 285 66.0
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 3.7e-111 405.6 316 64.9
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 6.4e-111 404.8 295 65.1
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.4e-110 402.9 305 65.6
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.0e-109 399.8 239 75.7
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.7e-109 399.4 322 60.2
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.5e-109 399.1 322 59.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.6e-109 398.7 332 60.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 5.9e-109 398.3 300 63.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.8e-109 397.9 289 65.1
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.3e-108 396.4 308 60.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.9e-108 396.0 296 63.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 5.0e-108 395.2 293 66.2
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.0e-108 395.2 290 62.8
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.0e-108 395.2 290 62.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 6.6e-108 394.8 292 65.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.6e-108 394.4 290 61.4
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.9e-107 393.3 289 64.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.9e-107 393.3 252 69.4
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.5e-107 392.9 270 67.4
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 4.3e-107 392.1 290 64.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 7.3e-107 391.3 304 59.5
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-106 390.6 306 62.1
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.2e-106 390.6 284 65.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-106 390.2 259 70.3
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.2e-106 388.3 267 69.7
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.2e-106 388.3 296 61.8
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 6.2e-106 388.3 290 61.7
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 6.2e-106 388.3 306 60.8
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 8.0e-106 387.9 308 60.1
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 8.0e-106 387.9 292 62.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.4e-105 387.1 289 64.0
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.3e-105 386.3 334 58.4
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 6.8e-105 384.8 287 61.7
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.2e-104 384.0 305 60.0
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-104 383.6 305 59.7
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.0e-104 383.3 253 68.0
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.4e-104 382.1 333 55.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.3e-103 380.6 290 62.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.7e-103 380.2 251 67.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.2e-103 379.8 305 61.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.9e-103 379.4 290 60.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.9e-103 378.6 287 62.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 8.3e-103 377.9 290 60.7
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.1e-102 377.5 326 59.5
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.4e-102 377.1 290 62.4
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 3.2e-102 375.9 302 59.9
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 3.2e-102 375.9 253 66.8
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.4e-102 375.2 303 60.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 7.0e-102 374.8 267 64.4
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 7.0e-102 374.8 302 61.3
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.0e-102 374.8 277 65.0
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.2e-101 374.0 331 57.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 2.7e-101 372.9 294 60.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 2.7e-101 372.9 294 60.5
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.7e-101 372.9 245 70.2
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 3.5e-101 372.5 331 58.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.8e-101 371.3 293 62.8
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.0e-100 370.9 290 62.4
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.0e-100 369.4 330 57.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.9e-100 369.0 302 60.9
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.9e-100 369.0 265 65.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 6.6e-100 368.2 291 61.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.5e-99 367.1 290 60.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.5e-99 364.4 289 58.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.2e-98 364.0 334 54.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.1e-98 363.2 261 65.5
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.1e-98 363.2 278 61.2
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.1e-98 361.3 291 62.5
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.1e-97 360.9 296 59.8
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.8e-97 360.1 286 59.4
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.3e-97 359.8 253 66.0
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.9e-97 357.8 352 52.6
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.5e-96 357.1 293 62.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 2.0e-96 356.7 250 64.8
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.4e-96 355.5 260 64.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 9.8e-96 354.4 283 58.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.9e-95 352.8 286 59.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 2.9e-95 352.8 291 59.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 3.7e-95 352.4 363 49.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.1e-94 350.9 196 81.6
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.9e-94 350.1 255 62.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 9.2e-94 347.8 238 67.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-93 347.4 302 55.3
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.7e-93 346.3 247 63.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 2.7e-93 346.3 312 55.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 6.0e-93 345.1 289 57.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.0e-92 344.4 273 62.6
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.6e-92 341.3 311 55.6
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 8.6e-92 341.3 258 64.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.7e-90 335.5 305 54.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 6.2e-90 335.1 267 60.3
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.6e-88 329.7 311 53.4
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.1e-86 324.3 303 53.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.6e-85 318.9 226 65.9
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 7.3e-83 311.6 365 46.0
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 8.4e-79 298.1 290 49.3
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.4e-78 297.4 302 50.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 5.1e-76 288.9 243 58.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-73 280.8 238 57.6
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.5e-72 277.3 200 67.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.5e-72 277.3 295 48.5
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.0e-72 276.9 242 54.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.7e-69 266.5 213 58.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.4e-65 253.4 235 51.9
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.0e-65 251.5 212 58.0
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.5e-62 242.3 235 46.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.5e-62 242.3 235 46.8
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 5.5e-62 242.3 156 68.6
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.6e-61 240.7 204 59.3
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 5.6e-59 232.3 194 58.8
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.7e-58 229.6 213 56.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.4e-57 226.9 270 41.1
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.0e-57 226.1 146 68.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-52 211.5 164 61.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.5e-51 206.8 166 60.8
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 9.6e-51 204.9 193 52.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.8e-50 203.4 214 50.9
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.2e-48 198.0 249 41.0
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.4e-46 191.0 159 59.1
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-42 176.8 200 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.8e-39 166.4 131 61.1
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.2e-38 162.9 149 61.7
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.8e-36 157.5 287 36.9
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.2e-34 150.6 151 52.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.2e-32 144.8 107 59.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.1e-25 121.7 106 57.5
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 7.7e-24 115.5 148 50.7
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.2e-22 110.2 76 65.8
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.0e-20 105.1 162 41.4
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.4e-20 104.8 72 62.5
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 8.8e-20 102.1 106 47.2
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.7e-18 96.7 76 55.3
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.1e-17 95.1 79 59.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.4e-17 94.0 72 55.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.2e-14 82.4 101 44.6
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.1e-09 68.6 36 75.0
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.6e-08 64.7 183 28.4


User provided reference genes

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