Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.6e-92 342.0 170 100.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.2e-79 298.5 168 86.9
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 4.2e-79 298.1 168 85.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 7.2e-79 297.4 169 87.6
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 7.2e-79 297.4 166 88.6
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 9.4e-79 297.0 164 87.8
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.2e-78 296.6 168 86.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.2e-78 296.6 168 85.7
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-78 296.2 173 87.3
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.1e-78 295.8 168 85.1
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.7e-78 295.4 173 87.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.7e-78 295.4 173 87.3
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 3.6e-78 295.0 168 85.1
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 3.6e-78 295.0 171 86.5
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 4.7e-78 294.7 168 85.7
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 6.1e-78 294.3 168 85.1
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.1e-78 294.3 173 87.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.1e-78 294.3 168 85.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.0e-78 293.9 173 86.7
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 8.0e-78 293.9 168 81.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 8.0e-78 293.9 168 86.9
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-77 293.5 173 86.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.4e-77 293.1 168 85.1
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.4e-77 293.1 171 86.5
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.4e-77 293.1 171 86.5
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.4e-77 293.1 169 84.6
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.3e-77 292.4 166 87.3
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.0e-77 292.0 168 83.9
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.0e-77 292.0 167 85.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.0e-77 292.0 170 85.9
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.0e-77 292.0 168 85.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.0e-77 291.6 166 84.3
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.2e-77 291.2 168 82.1
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.2e-77 291.2 168 84.5
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 6.7e-77 290.8 169 84.6
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.7e-77 290.8 169 84.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 8.8e-77 290.4 169 84.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 8.8e-77 290.4 169 84.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 8.8e-77 290.4 166 83.7
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 8.8e-77 290.4 169 84.6
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 8.8e-77 290.4 168 83.3
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.8e-77 290.4 168 83.3
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.1e-76 290.0 169 84.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.5e-76 289.7 170 84.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.5e-76 289.7 166 86.1
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 2.0e-76 289.3 166 85.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.0e-76 289.3 168 83.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.3e-76 288.5 168 83.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-76 288.1 168 82.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-76 288.1 168 82.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 4.4e-76 288.1 170 82.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 4.4e-76 288.1 168 83.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 7.5e-76 287.3 162 84.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 7.5e-76 287.3 168 83.9
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 7.5e-76 287.3 161 85.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 9.7e-76 287.0 168 82.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.3e-75 286.6 176 78.4
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 84.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 84.6
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.3e-75 284.3 174 78.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.2e-75 283.9 175 77.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 8.2e-75 283.9 162 84.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-74 283.5 164 85.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-74 282.7 168 81.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.8e-74 282.7 176 78.4
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.1e-74 282.0 168 81.5
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.1e-74 281.6 168 81.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 5.3e-74 281.2 178 77.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 9.1e-74 280.4 173 79.8
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.2e-73 280.0 168 80.4
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.7e-73 278.9 168 78.6
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.5e-73 278.5 178 75.8
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.5e-73 278.1 171 77.2
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.0e-72 276.9 168 81.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.0e-72 276.9 152 85.5
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.0e-72 276.9 156 83.3
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 79.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.3e-72 276.6 149 85.9
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.3e-72 276.6 149 85.9
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.7e-72 276.2 163 81.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.2e-72 275.8 170 79.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.2e-72 275.8 168 79.2
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.2e-72 275.8 177 76.3
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.9e-72 275.4 170 78.8
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 80.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 5.0e-72 274.6 170 79.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 6.5e-72 274.2 178 75.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.5e-72 273.9 152 84.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.5e-71 273.1 171 78.4
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.9e-71 272.7 168 79.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.9e-71 272.7 168 79.8
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.9e-71 272.7 174 78.2
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.9e-71 272.7 170 80.0
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.9e-71 272.7 167 79.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.9e-71 272.7 177 77.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.9e-71 272.7 168 80.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.5e-71 272.3 178 75.3
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 2.5e-71 272.3 168 77.4
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 4.2e-71 271.6 167 80.2
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.5e-71 271.2 174 75.3
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 7.2e-71 270.8 171 79.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 9.4e-71 270.4 174 77.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.2e-70 270.0 174 77.0
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.6e-70 269.6 150 84.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.6e-70 269.6 167 78.4
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.1e-70 269.2 172 77.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 2.7e-70 268.9 154 84.4
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 2.7e-70 268.9 159 80.5
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.7e-70 268.9 174 77.0
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 3.6e-70 268.5 178 73.6
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.6e-70 268.5 157 80.9
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.0e-69 266.9 146 87.0
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-69 266.9 170 75.9
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-69 266.9 172 76.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-69 266.5 163 76.7
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 6.8e-69 264.2 171 74.3
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.0e-68 262.7 170 78.2
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 5.7e-68 261.2 175 73.7
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-67 259.2 152 81.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-67 259.2 152 81.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.2e-67 259.2 175 73.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.8e-67 258.8 158 79.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 3.7e-67 258.5 175 73.1
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 149 81.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 8.3e-67 257.3 167 76.0
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.1e-66 256.9 149 80.5
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.4e-66 256.5 162 76.5
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.4e-66 256.5 149 80.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.1e-66 255.0 164 75.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 7.0e-66 254.2 228 58.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 9.1e-66 253.8 170 73.5
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.9e-65 251.1 162 74.1
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.7e-64 249.6 149 79.2
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.8e-64 248.4 151 77.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.6e-62 241.9 163 71.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 5.2e-61 238.0 150 74.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.5e-60 236.5 171 69.6
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 3.7e-59 231.9 145 75.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 6.3e-59 231.1 163 70.6
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.6e-57 226.5 162 70.4
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 3.5e-57 225.3 127 83.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.3e-56 222.6 127 83.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.0e-53 213.8 164 62.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.4e-52 208.4 132 75.8
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.5e-47 192.6 110 81.8
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 6.8e-45 184.5 134 65.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.5e-44 181.0 171 57.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 8.3e-43 177.6 133 59.4
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.4e-42 176.8 165 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 4.1e-42 175.3 134 61.9
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.7e-41 172.6 108 81.5
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.7e-41 172.6 134 59.7
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.5e-39 164.1 168 56.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 5.2e-37 158.3 88 89.8
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 5.8e-36 154.8 86 91.9
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.9e-34 149.8 112 69.6
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.3e-31 137.9 120 53.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.6e-28 127.9 105 66.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.7e-27 126.7 98 66.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 8.4e-27 124.4 99 59.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.4e-26 121.7 168 41.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.0e-25 118.2 121 45.5
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.3e-24 117.1 165 45.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.3e-23 112.1 126 42.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.3e-23 112.1 126 42.9
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 5.6e-23 111.7 71 74.6
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-20 103.2 66 71.2
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.0e-20 103.2 55 78.2
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 5.8e-20 101.7 63 73.0
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 3.9e-16 89.0 100 44.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 3.9e-16 89.0 100 44.0
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 8.7e-16 87.8 67 65.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.3e-15 85.9 55 72.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.6e-14 83.6 95 40.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.8e-12 75.1 64 51.6
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 9.9e-12 74.3 95 43.2


User provided reference genes

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