Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 2391.3 1229 100.0
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1299.3 1271 58.8
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1249.2 1194 58.7
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1236.5 1274 55.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1220.3 1304 53.1
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1219.5 1282 54.8
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1211.1 1288 55.4
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1210.3 1276 54.8
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1200.7 1129 58.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1198.7 1272 53.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1198.3 1267 54.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1197.2 1298 53.9
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1181.4 1293 53.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1180.2 1279 53.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1170.2 1273 53.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1164.1 1317 51.9
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1163.7 1276 53.4
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1276 53.1
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1154.4 1276 53.0
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1151.7 1279 52.4
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1148.3 1304 51.7
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1147.9 1278 51.6
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1145.6 1271 53.0
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1139.0 1112 56.5
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1138.6 1301 51.8
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1135.9 1149 56.1
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1134.4 1305 51.4
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1132.5 1323 51.5
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1129.8 1273 51.8
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1123.6 1289 51.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1119.4 1271 52.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1116.7 1175 53.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1108.6 962 60.9
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1104.0 1257 51.0
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1104.0 1173 53.8
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1099.0 1144 53.6
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1271 51.2
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1095.1 1255 51.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1092.0 1354 50.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1085.5 1294 50.0
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1082.4 1281 50.7
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1081.2 1154 53.4
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1077.4 1287 50.8
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 4.9e-310 1068.1 1266 50.4
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.1e-309 1067.0 1456 45.8
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 1.4e-309 1066.6 1104 54.7
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.2e-309 1063.9 1320 49.2
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.5e-306 1056.6 1261 49.9
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.9e-306 1056.2 1289 48.7
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.5e-306 1055.8 1322 47.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 4.3e-306 1055.0 1239 50.4
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 7.3e-306 1054.3 1358 47.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.6e-305 1053.1 1288 50.2
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 8.0e-305 1050.8 1209 51.1
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.0e-304 1048.5 1131 53.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 2.6e-303 1045.8 1274 49.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 4.4e-303 1045.0 1188 52.5
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 5.8e-303 1044.6 1256 49.8
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-302 1042.7 1317 49.0
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 8.3e-302 1040.8 1256 49.7
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 4.1e-301 1038.5 1257 49.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 5.4e-301 1038.1 1073 54.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 5.4e-301 1038.1 1267 49.5
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.6e-300 1036.6 1019 56.9
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.1e-300 1036.2 1120 53.6
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 4.6e-300 1035.0 1260 49.3
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.5e-298 1030.0 1257 49.3
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 5.6e-298 1028.1 1257 49.2
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 5.6e-298 1028.1 1257 49.2
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 3.6e-297 1025.4 1191 50.8
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.2e-295 1020.4 1336 47.2
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 6.4e-294 1014.6 1325 47.2
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.9e-293 1013.1 1139 51.7
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 4.1e-293 1011.9 1259 48.8
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 5.6e-290 1001.5 1260 48.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 7.3e-290 1001.1 1314 47.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.6e-289 1000.0 1171 50.0
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.8e-288 996.5 1220 48.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.4e-288 996.1 1132 50.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.0e-287 993.0 1360 45.8
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.4e-287 992.3 1280 47.8
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.1e-281 973.0 1468 43.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.8e-281 972.6 1103 51.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.0e-280 968.8 953 56.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.9e-277 959.9 1286 46.0
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.3e-274 949.1 1330 45.0
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.6e-273 945.7 994 53.8
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 6.9e-272 941.4 918 57.1
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.3e-270 937.2 1180 49.7
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 8.1e-265 917.9 1132 48.4
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.5e-252 875.9 1306 43.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.9e-245 853.6 1184 45.5
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.9e-245 853.6 1145 47.9
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 8.8e-243 844.7 1295 42.7
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.1e-237 827.8 1320 41.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.7e-236 823.2 1185 43.5
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 7.0e-232 808.5 1280 41.6
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.1e-216 756.5 1156 41.0
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 6.8e-211 738.8 548 67.7
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 7.5e-210 735.3 971 45.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 3.1e-208 729.9 1097 44.0
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.9e-206 723.4 944 47.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.5e-197 694.5 1195 39.2
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.6e-196 689.9 513 68.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 5.6e-181 639.4 521 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.4e-176 624.0 959 40.1
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 3.9e-158 563.5 1176 33.5
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 2.1e-156 557.8 1268 33.7
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.2e-143 515.4 803 41.6
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 6.7e-110 403.3 945 31.5
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.3e-97 362.5 646 40.1
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.8e-82 310.1 244 66.4
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.2e-76 292.0 278 57.9
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.4e-54 219.5 178 64.0
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.2e-53 216.5 157 70.1
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-49 202.6 231 47.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.8e-46 192.6 138 71.7
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.5e-40 172.9 597 27.1
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 6.2e-31 141.0 239 37.7
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.8e-30 139.4 105 61.9
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.8e-30 139.4 84 72.6
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.9e-30 137.5 114 62.3
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.2e-28 132.5 97 66.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.5e-26 125.2 106 60.4
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 9.6e-24 117.1 126 50.8
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.1e-22 113.6 138 45.7
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 9.0e-22 110.5 398 29.1
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.3e-19 100.5 120 48.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.1e-18 97.8 125 47.2
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 7.9e-18 97.4 116 47.4
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 5.7e-16 91.3 125 44.8
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 6.9e-14 84.3 94 48.9
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.0e-13 82.8 72 58.3
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 3.4e-13 82.0 147 37.4
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 7.9e-10 70.9 87 40.2
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 2.3e-09 69.3 90 48.9
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.6e-08 65.9 54 61.1
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.7e-07 62.0 40 70.0
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 5.3e-06 58.2 53 50.9
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 6.9e-06 57.8 87 40.2


User provided reference genes

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