Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 5.6e-178 627.5 314 100.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.2e-132 476.9 313 79.2
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.2e-132 476.9 313 79.2
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 2.7e-132 475.7 279 84.9
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.1e-132 474.6 313 79.2
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 7.9e-132 474.2 277 86.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 6.7e-131 471.1 315 77.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 8.8e-131 470.7 307 78.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.6e-130 469.2 311 78.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 5.7e-130 468.0 313 76.0
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.7e-129 465.3 311 77.2
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.8e-129 464.9 316 78.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 4.8e-129 464.9 322 75.5
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.4e-128 463.4 270 85.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.8e-128 463.0 277 82.3
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 2.4e-128 462.6 270 85.2
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 3.1e-128 462.2 322 76.1
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 5.3e-128 461.5 272 83.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 7.0e-128 461.1 270 84.4
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 9.1e-128 460.7 315 75.2
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.6e-127 459.1 280 82.1
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 5.9e-127 458.0 270 83.7
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 7.7e-127 457.6 274 82.1
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.7e-126 456.4 279 79.9
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.7e-126 456.4 279 80.6
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 3.8e-126 455.3 315 74.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 3.8e-126 455.3 292 79.5
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 5.0e-126 454.9 276 83.0
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 6.5e-126 454.5 271 82.3
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 6.5e-126 454.5 272 83.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.5e-126 454.5 277 80.9
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.9e-125 453.0 282 81.2
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 4.2e-125 451.8 280 80.4
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 5.5e-125 451.4 278 82.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.5e-125 451.4 317 72.6
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 9.4e-125 450.7 264 84.1
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.6e-124 449.9 276 81.2
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.6e-124 449.9 303 77.6
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.6e-124 449.9 303 77.6
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-124 449.5 270 82.2
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.1e-124 449.5 270 83.3
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 2.7e-124 449.1 270 82.6
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 3.6e-124 448.7 317 74.1
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 4.7e-124 448.4 280 78.6
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.1e-124 448.0 267 83.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.1e-124 448.0 321 73.2
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 8.0e-124 447.6 268 82.5
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 8.0e-124 447.6 268 82.8
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.0e-123 447.2 270 81.5
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.4e-123 446.8 278 80.6
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.3e-123 446.0 279 80.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 3.0e-123 445.7 268 81.7
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 3.0e-123 445.7 266 82.7
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 3.0e-123 445.7 274 81.0
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.0e-123 445.7 278 79.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.0e-123 445.7 274 81.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 4.0e-123 445.3 266 82.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.0e-123 445.3 265 83.0
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.8e-123 444.1 270 81.5
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-122 443.7 266 81.6
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.5e-122 443.4 266 82.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.5e-122 443.4 324 71.6
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.5e-122 443.4 265 81.5
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.6e-122 442.6 279 79.2
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.4e-122 441.8 348 68.1
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.4e-122 441.8 309 75.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.4e-122 441.8 309 75.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.4e-122 441.8 283 77.7
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 7.5e-122 441.0 265 82.3
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.2e-121 439.5 264 82.2
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.2e-121 439.5 264 82.2
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 2.8e-121 439.1 314 70.4
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.8e-121 439.1 348 68.1
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 3.7e-121 438.7 273 80.2
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 8.2e-121 437.6 268 81.0
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-120 437.2 322 70.2
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.4e-120 436.8 309 74.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.8e-120 436.4 338 66.6
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.4e-120 436.0 276 74.6
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 4.1e-120 435.3 270 79.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 4.1e-120 435.3 273 76.9
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.0e-120 434.5 276 74.6
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 3.5e-119 432.2 274 76.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.3e-118 430.3 276 76.4
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 2.2e-118 429.5 278 77.3
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.7e-116 422.5 253 83.0
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 8.8e-115 417.5 279 75.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.2e-114 417.2 273 74.7
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.2e-113 412.9 267 74.9
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 5.4e-112 408.3 249 81.9
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.7e-111 406.0 268 76.9
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-110 402.1 253 79.8
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.1e-109 400.6 272 72.1
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.2e-109 398.7 308 67.5
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.5e-109 398.3 295 70.2
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.6e-108 396.7 228 82.5
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.7e-108 396.0 255 78.8
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.7e-108 396.0 382 57.9
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 8.0e-108 394.4 261 74.3
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.8e-107 391.0 258 76.4
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 8.8e-107 391.0 234 82.5
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.1e-104 384.0 269 71.7
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.4e-104 382.9 273 74.0
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 2.9e-102 375.9 269 69.1
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.9e-101 373.2 221 84.6
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.3e-101 372.5 265 68.3
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 4.0e-99 365.5 280 66.4
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.3e-97 360.5 255 72.5
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.6e-95 353.6 261 70.1
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 3.5e-95 352.4 287 63.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 5.9e-95 351.7 265 70.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 7.8e-95 351.3 251 72.9
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.3e-94 349.7 263 66.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.8e-92 342.8 219 78.5
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 8.0e-92 341.3 239 74.5
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.8e-91 340.1 264 66.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 4.1e-88 328.9 264 61.4
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 6.0e-87 325.1 261 67.0
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 8.6e-86 321.2 268 61.6
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 6.2e-84 315.1 277 61.4
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-83 314.3 174 88.5
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.3e-83 313.2 242 68.2
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 6.8e-83 311.6 275 61.5
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 4.9e-81 305.4 177 84.2
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.9e-75 284.6 183 74.3
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.4e-72 276.6 183 72.7
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.9e-69 266.9 183 75.4
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 4.0e-67 259.2 154 81.8
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.3e-65 254.2 177 72.3
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-64 250.0 170 74.7
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.9e-62 242.7 138 85.5
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 4.2e-56 222.6 168 70.8
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 5.4e-56 222.2 260 45.0
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 7.4e-53 211.8 117 87.2
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 7.4e-53 211.8 117 87.2
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.8e-52 209.9 150 71.3
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.8e-52 209.1 119 84.9
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.8e-52 209.1 119 84.9
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.9e-45 187.2 122 74.6
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-43 180.3 108 83.3
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.0e-39 165.6 115 70.4
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.1e-37 161.4 142 57.7
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 7.4e-37 158.7 264 38.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.6e-36 157.5 125 58.4
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.0e-34 150.6 97 76.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.7e-33 147.5 157 51.6
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 9.3e-32 141.7 131 61.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 9.3e-32 141.7 116 62.1
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.2e-31 141.4 194 43.8
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 6.3e-28 129.0 77 85.7
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.5e-26 124.4 85 72.9
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 2.9e-25 120.2 70 84.3
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.2e-23 114.8 72 77.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.7e-21 105.9 69 71.0
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-20 104.0 74 68.9
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.4e-19 101.3 108 52.8
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.4e-19 101.3 108 52.8
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.4e-16 91.3 197 37.6
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-14 84.7 70 62.9
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 7.4e-13 79.0 46 80.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 4.2e-08 63.2 246 22.8
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.1e-07 60.8 34 76.5


User provided reference genes

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