Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.2e-183 646.4 322 100.0
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.2e-113 412.9 321 64.2
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 3.0e-110 402.5 322 63.0
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 4.1e-107 392.1 307 64.2
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.5e-106 390.2 306 61.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.6e-106 389.4 306 62.1
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.5e-106 388.7 309 62.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 7.7e-106 387.9 340 59.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.3e-105 387.1 309 60.5
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.3e-105 387.1 322 64.0
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 2.9e-105 386.0 321 61.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.9e-105 386.0 306 61.4
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.0e-105 385.2 323 59.4
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.4e-104 383.6 312 60.9
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.9e-104 383.3 311 61.1
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-102 377.1 310 61.3
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.4e-101 371.3 311 60.1
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.7e-100 370.2 309 58.6
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.8e-100 369.4 326 59.2
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 8.2e-100 367.9 313 59.1
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.1e-99 367.5 321 58.6
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.1e-99 367.5 312 59.6
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 4.1e-99 365.5 310 58.4
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 7.0e-99 364.8 313 59.4
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 7.0e-99 364.8 313 58.8
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 7.7e-98 361.3 331 56.2
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.7e-98 361.3 331 61.0
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.7e-97 360.1 300 59.3
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.7e-97 360.1 308 58.1
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.9e-97 359.4 329 61.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.5e-96 357.1 297 62.0
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 3.2e-96 355.9 288 62.2
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.2e-96 355.9 331 60.4
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.2e-96 354.8 320 61.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 7.2e-96 354.8 312 56.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.2e-95 354.0 312 56.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.2e-95 354.0 312 56.1
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.7e-95 352.8 323 60.1
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.6e-95 352.4 325 60.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.1e-95 351.7 311 57.9
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 8.0e-95 351.3 312 56.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.4e-94 350.5 307 57.0
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.0e-94 349.0 310 56.8
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.5e-93 347.1 340 55.0
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 7.5e-93 344.7 315 56.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 9.7e-93 344.4 315 56.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 9.7e-93 344.4 309 57.0
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.3e-92 344.0 302 58.3
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.8e-92 342.0 309 55.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.8e-91 340.1 325 55.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.0e-90 336.7 312 54.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 4.5e-90 335.5 299 56.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 4.5e-90 335.5 362 51.1
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.5e-90 335.5 284 59.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 7.7e-90 334.7 303 54.8
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.0e-89 334.3 318 55.7
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.0e-89 334.3 308 55.5
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.0e-89 334.3 308 55.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.7e-89 333.6 303 54.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.5e-88 329.7 311 55.0
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 7.2e-88 328.2 288 56.6
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.6e-87 327.0 302 54.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 3.6e-87 325.9 306 53.6
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 6.1e-87 325.1 318 54.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 8.0e-87 324.7 273 58.6
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.4e-86 323.9 293 56.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.4e-86 323.9 302 55.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.8e-86 323.6 305 54.4
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.3e-86 323.2 293 56.3
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.3e-86 323.2 294 54.8
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.0e-86 322.8 273 58.6
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.0e-86 322.8 300 57.3
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 4.0e-86 322.4 294 54.1
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 8.8e-86 321.2 304 53.3
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.2e-85 320.9 294 54.4
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 3.4e-85 319.3 304 54.3
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.2e-84 316.6 292 54.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.2e-84 316.6 292 54.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.2e-84 316.6 293 55.3
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.7e-84 315.8 278 56.1
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.8e-84 315.5 308 53.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.4e-83 312.0 272 56.6
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.5e-82 309.3 215 71.6
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.7e-81 307.0 291 54.6
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 3.8e-81 305.8 300 53.7
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 4.2e-80 302.4 313 52.4
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.2e-80 301.6 252 61.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.2e-79 300.8 277 55.2
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 2.8e-76 289.7 273 54.9
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 8.3e-76 288.1 296 52.4
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.4e-75 286.6 293 50.9
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.1e-75 286.2 293 52.9
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.4e-75 285.4 306 50.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.0e-74 283.5 260 56.5
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 6.6e-73 278.5 306 48.7
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 2.5e-72 276.6 227 61.7
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 4.3e-72 275.8 311 46.9
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.3e-72 275.8 229 59.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.8e-71 273.1 209 64.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 6.8e-70 268.5 298 46.6
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.2e-69 267.7 222 58.6
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.5e-69 267.3 308 49.0
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 7.5e-69 265.0 292 49.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 9.8e-69 264.6 302 46.0
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.7e-68 263.8 221 58.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.7e-68 263.8 278 50.4
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 6.4e-68 261.9 283 49.5
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 9.2e-67 258.1 243 53.9
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.6e-66 255.8 304 45.4
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 7.3e-64 248.4 242 58.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 6.2e-63 245.4 299 46.8
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 8.9e-62 241.5 291 46.4
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.8e-58 228.4 328 39.9
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.5e-56 224.2 292 43.5
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.2e-52 210.3 187 54.5
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.9e-52 209.1 179 59.2
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 5.4e-51 205.7 286 39.9
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.5e-48 196.8 210 48.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.3e-48 196.1 287 41.1
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.6e-47 194.1 209 53.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 8.1e-47 191.8 297 39.4
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 8.1e-47 191.8 180 52.2
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.4e-46 191.0 312 36.9
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-44 184.5 143 63.6
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.2e-43 179.9 208 43.8
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 7.8e-42 175.3 286 39.5
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 5.1e-41 172.6 168 52.4
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 7.6e-37 158.7 165 53.9
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.3e-36 157.9 140 53.6
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.6e-34 151.0 271 36.5
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.1e-30 138.3 221 43.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 9.3e-27 125.2 175 37.7
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.3e-27 125.2 133 49.6
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.0e-25 121.7 117 51.3
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 2.6e-21 107.1 118 45.8
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.3e-20 104.8 183 35.5
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 4.9e-20 102.8 112 48.2
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 6.0e-18 95.9 347 25.1
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.7e-17 92.0 108 47.2
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 3.3e-16 90.1 88 53.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 9.6e-16 88.6 100 50.0
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 8.1e-15 85.5 202 33.2
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.1e-14 85.1 108 44.4
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.2e-12 77.4 58 67.2
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-11 73.6 50 66.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-11 73.6 50 66.0
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.1e-10 70.9 58 55.2
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.3e-09 68.2 55 54.5
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 5.1e-09 66.2 163 31.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.1e-08 65.1 273 24.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.3e-07 61.6 219 25.6
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 2.1e-07 60.8 224 25.9
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.4e-06 58.2 167 26.3
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.8e-06 57.8 204 25.5
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.4e-06 57.4 254 22.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 2.4e-06 57.4 203 26.6
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 5.3e-06 56.2 221 24.4
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 5.3e-06 56.2 172 26.7


User provided reference genes

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