Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 3.8e-190 667.9 322 100.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.8e-163 579.3 321 83.8
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 4.4e-162 574.7 315 85.4
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 2.4e-160 568.9 317 83.3
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.2e-160 568.5 318 84.9
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.6e-159 566.2 319 83.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.0e-158 563.5 318 83.3
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.0e-158 562.0 318 82.7
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 3.0e-158 562.0 312 84.6
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 5.1e-158 561.2 321 81.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 5.1e-158 561.2 316 82.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 5.1e-158 561.2 315 84.4
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 6.6e-158 560.8 316 81.0
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 1.1e-157 560.1 316 83.2
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.9e-157 559.3 316 82.9
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.9e-157 559.3 311 85.2
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.5e-157 558.9 316 83.2
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 3.3e-157 558.5 316 84.2
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 5.6e-157 557.8 315 83.2
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 7.3e-157 557.4 316 81.0
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 7.3e-157 557.4 318 81.8
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 7.3e-157 557.4 316 82.0
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.6e-157 557.0 316 82.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 9.6e-157 557.0 316 83.2
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 1.2e-156 556.6 315 81.9
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.2e-156 556.6 315 81.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.2e-156 556.6 318 84.6
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 2.1e-156 555.8 319 81.2
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 2.1e-156 555.8 318 82.4
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 3.6e-156 555.1 315 81.9
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 3.6e-156 555.1 315 82.2
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 4.7e-156 554.7 316 82.0
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 8.1e-156 553.9 318 81.1
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 1.8e-155 552.7 316 81.6
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.4e-155 552.4 309 84.1
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.4e-155 552.4 311 82.0
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 3.1e-155 552.0 316 81.0
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 4.0e-155 551.6 302 86.4
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 5.2e-155 551.2 321 80.7
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.2e-155 551.2 316 81.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 8.9e-155 550.4 315 80.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.5e-154 549.7 316 80.7
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 2.6e-154 548.9 316 81.3
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 3.4e-154 548.5 318 83.3
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 4.4e-154 548.1 315 81.3
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 2.2e-153 545.8 300 84.7
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 2.9e-153 545.4 318 80.5
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.9e-153 545.4 302 83.8
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 4.9e-153 544.7 309 81.9
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 4.9e-153 544.7 316 78.5
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.9e-152 542.7 318 80.8
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.9e-152 542.7 322 79.8
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 3.2e-152 542.0 316 81.0
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.2e-152 542.0 314 80.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.6e-151 539.7 318 79.9
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 3.5e-151 538.5 297 85.5
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 7.8e-151 537.3 302 83.1
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 7.8e-151 537.3 313 80.5
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.3e-150 536.6 313 79.6
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 5.1e-150 534.6 302 83.1
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 6.6e-150 534.3 311 78.5
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-149 533.5 302 83.4
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.5e-149 533.1 312 81.1
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 4.3e-149 531.6 311 81.0
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.3e-149 531.6 310 78.4
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 5.6e-149 531.2 372 70.4
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.8e-148 528.9 311 80.7
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 4.8e-148 528.1 299 82.3
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 6.2e-148 527.7 310 80.6
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.1e-147 526.9 311 80.4
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 3.1e-147 525.4 303 80.2
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 9.0e-147 523.9 321 75.4
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.1e-144 516.9 297 83.5
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.4e-144 516.5 300 80.3
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.0e-142 510.4 302 79.5
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 4.3e-141 505.0 323 75.9
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 5.6e-141 504.6 284 83.1
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.3e-140 503.4 315 75.2
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.6e-140 501.9 297 78.5
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 4.8e-140 501.5 299 76.9
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.4e-139 499.2 318 76.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.1e-139 498.8 291 79.4
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.6e-138 495.7 294 76.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.4e-138 495.4 313 72.8
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 9.9e-138 493.8 308 76.3
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 9.3e-136 487.3 313 72.8
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.7e-134 480.7 262 86.3
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-133 480.3 262 86.3
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.3e-133 478.8 270 83.7
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.1e-132 474.2 262 85.9
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 7.6e-130 467.6 317 66.9
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 6.5e-129 464.5 318 71.7
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.9e-128 463.0 298 69.8
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 2.3e-126 456.1 265 81.1
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 6.7e-126 454.5 254 82.3
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.9e-125 453.0 285 76.5
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 2.5e-125 452.6 247 83.0
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.4e-123 446.0 299 72.6
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 6.3e-116 421.4 287 65.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 6.5e-113 411.4 303 69.0
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 5.5e-112 408.3 258 74.8
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.0e-110 404.1 274 72.3
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.4e-110 403.7 316 58.9
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.9e-104 383.3 233 77.7
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 5.5e-104 381.7 316 58.2
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 2.3e-102 376.3 218 79.4
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 5.5e-96 355.1 205 81.5
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 2.8e-92 342.8 326 51.8
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.4e-91 339.7 306 52.6
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.2e-79 300.8 302 51.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 4.7e-79 298.9 291 47.4
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.0e-78 295.8 212 67.0
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 3.5e-74 282.7 168 79.2
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.3e-73 280.8 179 74.3
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 8.3e-68 261.5 169 74.0
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-66 257.3 165 73.3
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.5e-64 250.0 143 81.8
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.7e-60 237.3 184 63.0
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-58 230.7 132 78.8
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 1.1e-54 218.0 132 75.0
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 5.2e-54 215.7 182 61.5
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.7e-49 200.7 120 75.0
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 2.5e-48 196.8 116 78.4
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 5.2e-46 189.1 108 79.6
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.2e-45 188.0 104 81.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.7e-41 174.1 123 67.5
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 1.1e-40 171.4 118 66.9
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 8.1e-39 165.2 172 54.1
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 6.9e-38 162.2 105 69.5
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.1e-34 150.6 314 34.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 3.6e-31 139.8 312 32.7
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.4e-30 137.9 106 60.4
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 3.1e-30 136.7 95 70.5
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-26 124.4 71 83.1
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 7.9e-26 122.1 119 54.6
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.5e-21 107.8 301 30.6
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.9e-20 103.6 95 52.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 7.1e-19 99.0 69 66.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 2.1e-18 97.4 69 66.7
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.0e-13 80.9 165 30.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.6e-13 80.5 294 27.2
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.0e-12 78.6 276 27.2
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 1.3e-12 78.2 55 67.3
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.9e-12 77.0 272 27.9
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.2e-10 71.6 45 71.1
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.7e-10 70.5 317 26.2
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 3.5e-10 70.1 42 76.2
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 3.5e-10 70.1 42 76.2
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 7.9e-10 68.9 42 73.8
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-09 68.2 211 27.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 3.0e-09 67.0 211 27.5
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-09 67.0 210 27.1
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-09 67.0 210 27.1
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-09 65.5 211 27.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-09 65.5 211 27.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-08 65.1 210 26.7
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.9e-08 64.3 210 26.7
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.5e-08 63.9 211 27.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.5e-08 63.9 211 27.5
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 4.3e-08 63.2 291 26.5
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-07 61.6 197 28.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.6e-07 61.2 209 29.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.8e-07 60.5 216 28.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-06 58.5 136 31.6
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 2.4e-06 57.4 63 49.2


User provided reference genes

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