Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 4.7e-121 438.0 235 100.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 3.0e-115 418.7 235 89.4
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.8e-89 332.4 218 75.2
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.4e-88 329.3 222 73.4
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 3.1e-88 328.9 222 73.9
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 2.0e-87 326.2 210 75.2
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 7.6e-87 324.3 210 75.2
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 9.9e-87 323.9 224 72.8
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 9.9e-87 323.9 210 75.7
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.9e-86 321.6 211 75.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 6.4e-86 321.2 211 74.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 8.4e-86 320.9 220 70.5
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.9e-85 319.7 220 70.5
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 2.4e-85 319.3 215 71.6
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 7.1e-85 317.8 213 73.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.2e-84 317.0 217 71.9
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.2e-84 317.0 218 73.4
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 1.6e-84 316.6 212 73.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 2.7e-84 315.8 217 72.8
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 2.7e-84 315.8 209 73.7
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.5e-84 315.5 214 72.4
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 4.6e-84 315.1 220 70.9
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 4.6e-84 315.1 213 73.7
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 4.6e-84 315.1 219 70.3
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 6.0e-84 314.7 213 73.7
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.0e-83 313.9 223 71.7
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.3e-83 312.8 218 72.5
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 2.3e-83 312.8 218 72.0
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 3.0e-83 312.4 213 73.2
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 5.1e-83 311.6 213 72.8
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 5.1e-83 311.6 206 72.3
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 1.5e-82 310.1 216 72.2
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.5e-82 310.1 221 69.7
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.5e-82 309.3 216 72.2
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.5e-82 309.3 222 70.3
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 3.3e-82 308.9 215 72.1
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.6e-82 308.1 216 72.2
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 5.6e-82 308.1 210 70.5
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 5.6e-82 308.1 210 70.5
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 7.4e-82 307.8 217 69.6
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.6e-81 306.6 218 68.8
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.6e-81 306.6 223 69.1
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.1e-81 306.2 218 68.8
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.1e-81 306.2 212 70.8
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 2.8e-81 305.8 220 69.5
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 2.8e-81 305.8 219 69.9
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 3.7e-81 305.4 215 69.3
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 4.8e-81 305.1 211 71.1
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 6.2e-81 304.7 210 70.5
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 6.2e-81 304.7 221 68.3
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 2.4e-80 302.8 211 70.6
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 9.0e-80 300.8 214 69.6
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.2e-79 300.4 209 68.4
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 1.2e-79 300.4 219 68.5
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.8e-79 298.1 209 68.4
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 1.0e-78 297.4 212 68.9
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.3e-78 297.0 209 67.5
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.7e-78 296.6 212 68.9
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 2.2e-78 296.2 220 68.2
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.8e-78 295.4 244 61.9
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.9e-78 295.0 209 67.0
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 4.9e-78 295.0 210 67.1
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 6.5e-78 294.7 220 65.5
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 6.5e-78 294.7 210 67.6
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.1e-76 289.7 214 67.3
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 2.7e-76 289.3 221 64.7
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 2.7e-76 289.3 220 65.9
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 4.6e-76 288.5 216 67.6
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.9e-76 287.7 223 63.7
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 7.9e-76 287.7 220 65.9
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 1.8e-75 286.6 206 69.9
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 5.1e-75 285.0 220 64.1
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 8.7e-75 284.3 220 64.1
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 8.7e-75 284.3 208 68.3
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.1e-74 283.9 238 61.3
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.9e-74 283.1 220 65.0
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 3.3e-74 282.3 215 67.9
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 2.8e-73 279.3 220 64.1
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 3.7e-73 278.9 210 65.2
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 6.3e-73 278.1 210 66.2
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 3.1e-72 275.8 208 66.3
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.5e-71 273.5 216 64.4
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.6e-71 272.7 225 61.8
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.0e-70 270.8 215 63.3
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.2e-70 269.6 212 64.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 2.2e-70 269.6 215 64.2
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 2.2e-70 269.6 215 64.2
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.2e-70 269.6 241 60.6
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 5.0e-70 268.5 206 64.1
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 8.4e-70 267.7 215 67.0
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 5.5e-69 265.0 242 58.3
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.0e-67 259.2 225 60.0
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.6e-60 235.3 228 52.2
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 5.7e-58 228.4 218 58.7
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.7e-58 228.4 220 50.0
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 4.5e-55 218.8 192 60.4
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 4.5e-55 218.8 129 79.8
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.7e-55 218.0 129 77.5
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.0e-54 215.3 128 79.7
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.0e-54 215.3 128 79.7
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.4e-50 201.4 157 65.6
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.8e-49 198.7 146 67.8
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 3.5e-47 192.6 173 60.7
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.5e-47 192.2 168 60.7
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 2.9e-46 189.5 188 55.9
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 6.5e-46 188.3 151 64.9
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 7.2e-45 184.9 175 56.0
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 3.3e-42 176.0 254 36.2
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 4.5e-39 165.6 104 75.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.2e-38 163.3 136 57.4
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.8e-38 162.5 107 70.1
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 6.5e-38 161.8 138 58.0
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 7.5e-34 148.3 135 57.0
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 1.6e-31 140.6 116 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.9e-30 136.3 164 44.5
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.4e-27 127.5 77 79.2
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 6.8e-27 125.2 79 74.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.8e-27 124.8 78 78.2
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.5e-26 124.0 77 76.6
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-26 123.6 79 77.2
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.4e-26 122.9 79 75.9
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.4e-26 122.9 79 75.9
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.7e-26 122.1 78 76.9
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.7e-26 122.1 78 76.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 2.2e-25 120.2 67 82.1
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.3e-21 106.3 66 69.7
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.6e-20 104.0 134 46.3
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 4.7e-20 102.4 83 66.3
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 8.0e-20 101.7 97 60.8
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 2.0e-18 97.1 78 62.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 7.5e-18 95.1 82 57.3
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.1e-16 89.4 49 79.6
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 9.2e-16 88.2 53 71.7
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 1.6e-15 87.4 56 64.3
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.6e-15 87.4 94 47.9
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.7e-15 86.7 72 62.5
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 7.8e-15 85.1 63 66.7
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.3e-14 84.3 81 55.6
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.0e-14 82.4 53 67.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.5e-13 80.9 169 28.4
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.2e-12 77.8 53 58.5
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-11 72.4 164 25.0
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 5.2e-11 72.4 161 26.1
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 8.9e-11 71.6 123 34.1
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 8.9e-11 71.6 172 25.0
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.2e-10 71.2 63 52.4
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.5e-10 70.9 174 24.1
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.2e-09 67.0 174 27.6
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 9.2e-08 61.6 34 67.6
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 9.2e-08 61.6 204 22.1
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 3.5e-07 59.7 132 26.5
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 6.0e-07 58.9 35 65.7


User provided reference genes

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