Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.1e-130 469.9 231 100.0
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.9e-114 416.0 235 89.4
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 7.7e-92 340.9 230 74.3
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 2.2e-91 339.3 243 71.6
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 3.8e-91 338.6 231 73.6
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 3.8e-91 338.6 230 74.3
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 9.4e-90 334.0 215 75.8
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.7e-89 332.4 218 75.2
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 6.1e-89 331.3 238 71.8
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.0e-88 330.5 215 75.3
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.3e-88 329.3 230 70.9
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 8.8e-88 327.4 228 71.5
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.5e-87 326.6 217 74.2
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.0e-87 326.2 232 71.1
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 2.0e-87 326.2 215 75.3
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.0e-87 326.2 224 71.0
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 7.5e-87 324.3 230 72.2
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 9.8e-87 323.9 213 74.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.7e-86 323.2 219 73.1
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.8e-86 321.6 227 72.2
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 4.8e-86 321.6 228 68.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 4.8e-86 321.6 228 68.4
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 6.3e-86 321.2 219 74.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 8.3e-86 320.9 219 74.0
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.4e-85 320.1 229 69.0
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.8e-85 319.7 229 68.6
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 3.1e-85 318.9 229 72.1
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 3.1e-85 318.9 213 74.6
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 5.4e-85 318.2 235 70.2
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 7.0e-85 317.8 217 73.7
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.2e-84 317.0 234 69.7
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 2.0e-84 316.2 220 73.2
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 2.0e-84 316.2 224 72.3
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.0e-84 316.2 230 70.9
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.7e-84 315.8 220 71.4
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.5e-84 315.5 223 69.5
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 3.5e-84 315.5 225 69.3
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 3.5e-84 315.5 218 72.9
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 4.5e-84 315.1 223 69.5
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.0e-83 313.9 228 69.7
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.3e-83 312.8 227 70.9
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.9e-83 312.4 216 72.7
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 3.8e-83 312.0 234 67.1
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 3.8e-83 312.0 215 71.2
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 6.5e-83 311.2 214 69.6
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 6.5e-83 311.2 215 71.6
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 1.1e-82 310.5 206 72.3
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 2.5e-82 309.3 224 68.8
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.3e-82 308.9 214 69.6
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.2e-82 307.8 214 68.7
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 7.2e-82 307.8 212 71.2
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 7.2e-82 307.8 225 69.3
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 7.2e-82 307.8 229 67.7
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.2e-81 307.0 215 70.7
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 2.1e-81 306.2 225 68.9
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.8e-81 305.8 214 68.2
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 2.8e-81 305.8 221 69.2
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 3.6e-81 305.4 220 70.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.6e-81 305.4 240 65.4
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 4.0e-80 302.0 210 71.0
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.6e-79 299.3 217 68.7
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 2.6e-79 299.3 214 67.3
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.4e-79 298.5 228 64.9
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.7e-79 298.1 214 67.3
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 4.9e-78 295.0 225 64.9
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 8.3e-78 294.3 241 62.2
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.8e-77 293.1 221 66.5
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.8e-77 293.1 239 64.4
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.8e-77 293.1 227 65.2
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.4e-77 292.7 211 69.2
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.4e-77 292.7 239 63.2
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 4.1e-77 292.0 222 66.2
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 1.6e-76 290.0 220 67.7
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 2.0e-76 289.7 227 63.4
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.7e-76 289.3 216 67.6
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 7.8e-76 287.7 227 63.4
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 1.3e-75 287.0 229 64.6
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 2.9e-75 285.8 227 64.3
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.0e-75 285.0 252 61.5
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 5.0e-75 285.0 215 65.6
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 8.6e-75 284.3 225 63.1
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.5e-74 283.5 216 66.2
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 9.5e-74 280.8 230 62.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 2.8e-73 279.3 220 63.6
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.8e-73 279.3 221 65.2
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 4.0e-72 275.4 211 64.5
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 5.2e-72 275.0 247 59.1
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-71 273.1 234 61.1
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.6e-71 272.7 207 66.7
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 2.6e-71 272.7 210 66.2
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 2.6e-71 272.7 210 66.2
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 9.8e-71 270.8 219 64.8
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.1e-61 240.7 233 52.4
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.0e-59 234.2 199 64.3
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.7e-59 233.4 223 51.1
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.6e-57 225.7 202 60.4
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.6e-55 219.5 129 79.8
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-54 216.5 168 66.7
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 8.3e-54 214.5 129 76.7
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-53 213.8 157 68.8
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.4e-53 213.0 128 78.9
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.4e-53 213.0 128 78.9
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.9e-50 203.4 191 58.1
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 2.8e-49 199.5 193 57.0
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 9.9e-47 191.0 149 67.1
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.7e-46 190.3 182 56.0
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 6.4e-46 188.3 151 66.2
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 3.9e-43 179.1 143 62.2
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 5.6e-42 175.3 254 36.6
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.3e-38 164.1 104 74.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-37 161.0 107 70.1
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 1.4e-37 160.6 136 56.6
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 5.1e-35 152.1 135 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 5.3e-32 142.1 170 45.9
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 7.6e-31 138.3 116 58.6
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.3e-27 127.5 77 79.2
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.7e-27 124.8 79 74.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.1e-26 124.4 78 78.2
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.5e-26 124.0 77 76.6
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.5e-26 123.2 79 77.2
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-26 122.5 79 75.9
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.3e-26 122.5 79 75.9
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.4e-26 121.7 78 76.9
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.4e-26 121.7 78 76.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 8.1e-25 118.2 67 80.6
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 3.1e-24 116.3 118 54.2
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 6.4e-22 108.6 88 65.9
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 4.2e-21 105.9 101 61.4
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.3e-21 104.8 66 69.7
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 6.0e-20 102.1 87 59.8
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 2.5e-18 96.7 78 62.8
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 5.3e-16 89.0 49 79.6
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 6.9e-16 88.6 88 55.7
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.5e-15 87.4 53 71.7
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.6e-15 86.7 72 62.5
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 3.4e-15 86.3 56 64.3
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 3.4e-15 86.3 94 47.9
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 5.8e-15 85.5 63 66.7
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.9e-14 82.4 53 67.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 9.3e-13 78.2 163 27.6
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 2.7e-12 76.6 53 58.5
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 5.1e-11 72.4 161 26.1
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.1e-10 71.2 174 30.5
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-10 71.2 164 25.0
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.1e-10 71.2 172 25.0
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.5e-10 70.9 63 52.4
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.5e-10 70.1 174 24.1
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 4.8e-09 65.9 176 26.7
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.5e-07 60.8 204 22.1
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.0e-07 60.5 34 67.6
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 4.5e-07 59.3 132 26.5
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 1.3e-06 57.8 35 65.7


User provided reference genes

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