Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.7e-164 582.8 346 100.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 5.6e-54 215.7 367 44.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 4.0e-52 209.5 375 47.2
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.2e-50 203.8 385 42.1
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 4.9e-50 202.6 385 42.1
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.4e-49 200.3 377 43.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.2e-49 199.9 385 41.0
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-48 198.0 390 40.5
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.5e-48 196.4 383 40.2
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.8e-48 195.3 390 40.8
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-46 191.0 363 49.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.3e-46 189.9 404 40.3
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.6e-45 187.6 377 41.1
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 6.2e-45 185.7 391 39.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.4e-44 183.7 379 45.1
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.1e-44 183.3 395 46.3
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 4.0e-44 183.0 387 42.1
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 9.0e-44 181.8 414 43.5
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 5.8e-43 179.1 348 48.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.2e-42 177.2 359 40.7
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.9e-42 176.0 351 40.7
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.4e-42 175.6 351 41.3
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.4e-41 173.7 382 39.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.2e-41 172.9 351 40.7
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 7.1e-41 172.2 365 44.1
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-40 171.4 413 36.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.8e-39 167.5 379 38.8
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.7e-39 165.6 371 44.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.1e-38 164.9 361 39.6
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.5e-38 164.5 407 37.3
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-38 164.5 355 40.6
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.5e-38 164.5 374 41.7
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.3e-38 163.3 363 41.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.3e-38 163.3 374 39.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.3e-37 161.4 347 42.7
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.6e-37 161.0 357 39.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.1e-37 160.6 365 39.5
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 8.1e-37 158.7 371 46.1
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.1e-36 156.8 358 43.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 6.9e-36 155.6 378 39.2
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 9.0e-36 155.2 380 41.6
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.5e-35 154.5 361 45.7
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 4.5e-35 152.9 374 42.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 7.6e-35 152.1 439 41.5
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 7.6e-35 152.1 300 40.3
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 3.8e-34 149.8 362 38.7
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.2e-32 144.8 403 43.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.2e-32 144.8 364 47.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.6e-32 144.4 357 35.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.1e-32 144.1 231 54.1
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.1e-32 144.1 364 37.9
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 4.6e-32 142.9 399 41.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 6.0e-32 142.5 367 37.1
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.0e-32 142.5 407 38.8
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 7.9e-32 142.1 383 43.6
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 2.3e-31 140.6 286 46.5
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 3.9e-31 139.8 138 58.0
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.7e-31 139.0 346 38.2
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.5e-30 137.9 259 40.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.9e-30 137.5 350 37.7
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.5e-30 137.1 207 52.7
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 9.6e-30 135.2 283 48.8
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.1e-29 134.0 368 39.7
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 6.2e-29 132.5 359 38.2
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.1e-28 131.7 219 47.5
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.4e-28 130.6 379 33.8
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 5.3e-28 129.4 213 41.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 6.9e-28 129.0 365 36.2
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.2e-27 128.3 221 41.6
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-27 128.3 374 42.2
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.5e-27 127.9 364 37.1
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.5e-27 127.9 353 38.8
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 7.6e-27 125.6 210 42.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 7.6e-27 125.6 369 42.3
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.0e-26 125.2 358 36.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.3e-26 124.8 357 35.0
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.7e-26 124.4 297 36.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.7e-26 124.4 342 36.3
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 2.2e-26 124.0 355 37.2
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.8e-26 123.2 225 39.1
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.1e-25 121.7 347 42.4
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.5e-25 120.6 289 40.5
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.2e-25 119.8 359 35.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.6e-24 117.9 401 35.9
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.7e-24 117.1 290 44.5
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 6.0e-24 115.9 361 36.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.8e-23 114.4 235 35.7
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.3e-23 114.0 348 34.8
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 3.9e-23 113.2 363 35.0
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.9e-23 113.2 350 34.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 8.7e-23 112.1 306 43.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 8.7e-23 112.1 349 33.2
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.9e-22 110.9 138 47.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.3e-22 110.2 300 44.7
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 5.7e-22 109.4 343 33.2
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.7e-22 109.4 121 55.4
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.3e-21 108.2 361 32.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.2e-21 107.5 133 50.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 8.2e-21 105.5 350 32.6
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 8.2e-21 105.5 296 34.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 8.2e-21 105.5 119 55.5
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.1e-20 105.1 134 49.3
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-20 104.8 346 33.2
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.4e-20 104.8 129 55.0
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.8e-20 104.4 347 32.6
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 2.4e-20 104.0 380 30.0
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 3.1e-20 103.6 350 33.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.1e-20 103.6 120 54.2
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.1e-20 103.2 353 33.7
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 4.1e-20 103.2 343 33.5
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.1e-20 103.2 121 52.1
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 4.1e-20 103.2 138 47.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.1e-20 103.2 171 43.3
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 5.3e-20 102.8 341 37.0
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 9.0e-20 102.1 124 50.8
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.2e-19 101.7 121 49.6
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.2e-19 101.7 302 32.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.0e-19 100.9 348 32.2
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 2.6e-19 100.5 356 31.7
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.6e-19 100.5 342 31.6
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 4.5e-19 99.8 339 33.0
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 5.9e-19 99.4 121 51.2
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 7.7e-19 99.0 128 55.5
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 7.7e-19 99.0 129 52.7
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-18 98.2 142 43.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-18 97.8 356 31.5
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-18 97.4 356 31.5
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.8e-18 96.7 146 50.0
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 5.0e-18 96.3 124 50.0
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.0e-18 96.3 310 35.2
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 8.5e-18 95.5 116 51.7
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.5e-18 95.5 151 48.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-17 94.7 354 36.2
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.5e-17 94.0 345 36.5
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.5e-17 94.0 277 33.6
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 4.2e-17 93.2 343 31.2
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.5e-17 92.8 125 44.8
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 7.2e-17 92.4 347 31.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 7.2e-17 92.4 347 31.1
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 7.2e-17 92.4 347 31.1
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.6e-16 91.3 345 36.8
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.1e-16 90.9 351 39.6
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-16 90.9 122 52.5
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.1e-16 90.9 81 56.8
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 4.6e-16 89.7 58 74.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 6.1e-16 89.4 367 31.6
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-15 88.2 356 31.5
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.8e-15 87.8 123 46.3
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.0e-15 87.0 45 86.7
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.1e-15 86.3 120 45.8
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.7e-15 85.9 52 75.0
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 8.8e-15 85.5 42 88.1
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.3e-14 83.6 80 53.8
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.3e-14 83.6 80 53.8
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 4.8e-13 79.7 94 48.9
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 2.6e-11 73.9 47 74.5
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.9e-11 72.8 278 32.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.9e-10 70.5 354 29.7
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.8e-10 70.1 42 71.4
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 8.5e-10 68.9 277 29.2
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.5e-10 68.9 42 69.0
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.9e-09 67.8 57 57.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.2e-09 66.6 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.1e-08 64.3 58 51.7
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.5e-06 58.2 37 62.2
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 7.4e-06 55.8 183 27.3


User provided reference genes

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