Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.7e-55 219.2 113 100.0
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.3e-39 166.4 112 75.9
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.2e-39 165.6 113 77.0
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 8.3e-39 163.7 113 74.3
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.4e-38 162.9 113 72.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.8e-38 162.5 111 73.0
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.8e-38 162.5 113 72.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.4e-38 162.2 111 73.0
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 4.1e-38 161.4 113 72.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 5.4e-38 161.0 113 73.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 7.0e-38 160.6 111 73.0
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.2e-37 159.8 111 71.2
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.2e-37 159.8 113 72.6
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-37 159.8 111 72.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.2e-37 159.8 113 72.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.6e-37 159.5 113 74.3
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.6e-37 159.5 111 71.2
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.6e-37 159.5 109 75.2
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 72.6
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-37 159.1 107 76.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-37 159.1 107 76.6
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.0e-37 159.1 107 76.6
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.0e-37 159.1 113 71.7
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.5e-37 158.3 109 74.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.5e-37 157.9 111 72.1
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.5e-37 157.9 113 71.7
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 4.5e-37 157.9 113 72.6
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.9e-37 157.5 109 74.3
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 7.7e-37 157.1 109 73.4
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.3e-36 156.4 111 68.5
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.3e-36 156.4 111 68.5
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.2e-36 155.6 107 74.8
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.2e-36 155.6 113 69.0
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 2.2e-36 155.6 111 69.4
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.9e-36 155.2 111 71.2
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.8e-36 154.8 107 73.8
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.8e-36 154.8 109 72.5
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 5.0e-36 154.5 107 72.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 5.0e-36 154.5 113 69.0
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 5.0e-36 154.5 113 68.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 5.0e-36 154.5 113 70.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 5.0e-36 154.5 109 70.6
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 8.5e-36 153.7 107 72.9
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.5e-35 152.9 109 70.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.5e-35 152.1 111 70.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.2e-35 151.8 113 69.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.2e-35 151.8 107 72.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 7.2e-35 150.6 107 70.1
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 2.1e-34 149.1 111 67.6
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 2.8e-34 148.7 109 69.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.6e-34 148.3 111 69.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.6e-34 148.3 110 68.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 4.7e-34 147.9 110 66.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 6.1e-34 147.5 109 67.0
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.0e-33 146.7 111 68.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.4e-33 146.4 111 66.7
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-33 146.4 113 67.3
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.8e-33 146.0 113 69.0
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.3e-33 145.6 109 70.6
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.0e-33 144.8 113 64.6
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 5.2e-33 144.4 149 55.7
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.8e-33 144.1 113 63.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 6.8e-33 144.1 113 63.7
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.8e-33 144.1 107 66.4
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 8.8e-33 143.7 110 64.5
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 8.8e-33 143.7 113 67.3
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.8e-33 143.7 111 65.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.2e-32 143.3 107 69.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.5e-32 142.9 107 68.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.5e-32 142.9 113 67.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 2.6e-32 142.1 113 63.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.6e-32 142.1 113 66.4
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.6e-32 142.1 111 64.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.6e-32 142.1 111 64.0
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 3.4e-32 141.7 113 66.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.4e-32 141.4 107 65.4
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 5.7e-32 141.0 113 63.7
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 5.7e-32 141.0 113 62.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 7.5e-32 140.6 113 62.8
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 7.5e-32 140.6 111 64.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 7.5e-32 140.6 111 63.1
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 9.8e-32 140.2 113 62.8
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.2e-31 139.0 113 61.1
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.8e-31 138.7 113 66.4
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 3.7e-31 138.3 107 69.2
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.3e-31 137.5 113 60.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.1e-30 136.7 112 64.3
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.1e-30 136.7 112 64.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.4e-30 135.6 113 63.7
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 3.1e-30 135.2 107 63.6
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 4.1e-30 134.8 107 62.6
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-30 134.8 109 62.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 4.1e-30 134.8 111 59.5
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 5.4e-30 134.4 188 43.6
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 5.4e-30 134.4 107 64.5
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 5.4e-30 134.4 107 64.5
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 5.4e-30 134.4 109 64.2
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 7.0e-30 134.0 109 62.4
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.2e-29 133.3 113 64.6
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-29 132.9 109 61.5
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.6e-29 132.9 114 60.5
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 61.5
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.0e-29 132.5 109 63.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 4.5e-29 131.3 107 62.6
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.3e-25 119.0 147 46.9
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.2e-25 117.9 88 69.3
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.9e-25 117.1 96 64.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 3.4e-24 115.2 112 53.6
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.4e-24 115.2 114 54.4
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.7e-23 111.7 127 51.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.1e-22 110.2 115 52.2
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 2.7e-21 105.5 241 33.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.3e-20 103.2 76 69.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.3e-20 102.4 113 54.9
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 3.0e-20 102.1 78 66.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 8.0e-18 94.0 52 84.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.4e-17 93.2 54 75.9
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 3.1e-17 92.0 104 52.9
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-17 92.0 104 52.9
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 4.1e-14 81.6 107 43.0
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-13 80.1 101 43.6
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-13 79.7 95 45.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.0e-12 75.5 102 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 8.6e-12 73.9 100 40.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.1e-11 73.6 102 43.1
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.3e-11 72.0 107 39.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 7.3e-11 70.9 110 35.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.6e-10 68.6 53 62.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-10 67.4 40 75.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-10 67.4 62 56.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-10 67.4 40 75.0
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-10 67.4 40 75.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-09 65.9 40 72.5
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 3.1e-09 65.5 89 39.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.4e-08 62.0 37 75.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.8e-08 61.2 99 41.4
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 3.7e-07 58.5 49 63.3
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-06 55.8 34 70.6
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 9.2e-06 53.9 85 47.1


User provided reference genes

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