Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 7.0e-95 351.3 283 100.0
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 6.2e-43 178.7 256 69.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 8.1e-43 178.3 260 69.2
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.2e-41 174.5 257 68.9
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-41 173.7 256 67.2
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 2.6e-41 173.3 256 67.2
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.3e-40 171.0 260 68.1
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.8e-40 169.5 265 67.5
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.9e-40 169.1 258 69.4
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 6.4e-40 168.7 258 67.1
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 8.4e-40 168.3 256 66.4
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.4e-39 165.6 259 71.4
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.3e-39 164.9 258 69.8
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.2e-38 164.5 257 62.3
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.7e-38 163.3 241 70.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.3e-37 161.0 273 67.4
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.7e-37 158.7 257 66.1
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 8.7e-37 158.3 257 66.9
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 8.7e-37 158.3 261 65.9
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.9e-36 157.1 261 54.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.9e-36 157.1 236 59.7
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.5e-36 156.8 264 65.9
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.3e-36 156.4 257 66.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.3e-36 156.4 267 64.8
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 5.6e-36 155.6 257 65.4
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 9.6e-36 154.8 171 57.3
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.6e-35 154.1 255 65.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.6e-35 154.1 256 66.0
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.6e-35 154.1 276 63.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 2.1e-35 153.7 267 64.8
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 2.8e-35 153.3 260 52.3
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-35 152.9 276 63.8
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.7e-35 152.9 268 64.2
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.8e-35 152.5 264 64.0
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.8e-35 152.5 276 63.8
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 4.8e-35 152.5 236 67.8
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.2e-35 152.1 273 64.5
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.1e-35 151.8 276 63.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.1e-35 151.8 260 65.4
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.1e-34 151.4 176 59.1
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.1e-34 151.4 277 62.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.4e-34 151.0 261 65.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.8e-34 150.6 263 66.5
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.4e-34 150.2 257 63.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.3e-34 149.1 246 67.1
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.3e-34 149.1 261 64.8
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.9e-34 148.7 268 63.4
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 2.0e-33 147.1 263 63.5
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.0e-33 147.1 265 63.8
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.0e-33 147.1 265 66.4
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.6e-33 146.7 280 58.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 2.6e-33 146.7 174 58.6
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-33 146.7 263 62.4
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 7.6e-33 145.2 259 62.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 7.6e-33 145.2 271 63.5
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.6e-33 145.2 271 63.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.3e-32 144.4 265 63.4
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.3e-32 144.4 265 63.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.9e-32 143.3 257 62.6
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.8e-32 142.9 264 64.4
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.4e-32 142.1 155 59.4
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 8.4e-32 141.7 236 66.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 266 63.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.9e-31 140.6 266 63.2
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 268 63.8
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 265 62.6
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 4.2e-31 139.4 258 61.2
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.1e-31 138.7 252 63.9
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.3e-31 138.3 269 62.5
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.6e-30 137.5 262 64.5
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-30 137.5 255 60.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 7.9e-30 135.2 178 58.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-29 134.0 251 64.1
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.8e-29 134.0 242 67.4
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.0e-29 133.3 217 69.1
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.0e-29 133.3 220 70.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.7e-29 132.1 297 56.2
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.7e-29 132.1 195 49.7
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.7e-29 132.1 267 58.8
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 8.7e-29 131.7 238 66.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 4.3e-28 129.4 236 66.5
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 5.6e-28 129.0 295 58.0
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 7.4e-28 128.6 268 62.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 7.4e-28 128.6 256 62.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 7.4e-28 128.6 244 63.5
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.6e-28 128.3 253 62.5
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 9.6e-28 128.3 247 63.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.1e-27 127.1 233 62.2
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.7e-27 126.3 270 60.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.7e-27 126.3 243 63.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 3.7e-27 126.3 256 50.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.8e-27 125.9 248 63.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.2e-27 125.6 261 62.8
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.4e-26 124.4 242 65.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.8e-26 124.0 255 62.7
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.0e-26 122.9 178 51.7
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.0e-26 122.9 178 51.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.0e-26 122.9 229 65.9
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.3e-26 122.5 169 48.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.9e-26 122.1 175 49.1
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.5e-25 120.9 220 43.6
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.0e-25 120.6 276 58.0
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 2.0e-25 120.6 239 52.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.0e-24 118.2 241 63.5
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.3e-24 117.9 259 61.8
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.9e-24 116.7 272 57.0
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 4.9e-24 115.9 265 58.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 4.9e-24 115.9 275 59.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 8.4e-24 115.2 265 55.8
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.4e-23 114.4 161 52.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.9e-23 114.0 274 57.3
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 2.5e-23 113.6 246 61.4
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.2e-23 113.2 228 64.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 4.2e-23 112.8 254 53.9
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.2e-22 111.3 237 62.4
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.2e-22 111.3 251 61.0
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.2e-22 111.3 254 43.7
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.1e-22 110.5 257 56.0
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.1e-22 110.5 239 61.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.1e-22 110.5 148 55.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.5e-22 109.8 272 55.9
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.5e-22 109.8 272 55.9
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.5e-22 109.8 272 55.9
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 4.6e-22 109.4 254 44.1
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 4.6e-22 109.4 254 44.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.6e-22 109.4 161 51.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 4.6e-22 109.4 255 59.6
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.3e-21 107.8 240 60.0
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.3e-21 107.1 262 56.9
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.9e-21 106.3 254 52.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 3.9e-21 106.3 254 52.0
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 5.1e-21 105.9 235 61.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 6.7e-21 105.5 228 64.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 8.7e-21 105.1 246 61.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.1e-20 104.8 226 61.1
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-20 104.8 264 55.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.5e-20 103.6 254 32.7
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.5e-20 103.6 211 42.7
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.3e-20 102.8 238 59.7
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 5.7e-20 102.4 212 47.2
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.7e-20 102.4 225 49.3
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 7.4e-20 102.1 269 54.6
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 9.7e-20 101.7 217 64.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.7e-20 101.7 165 75.8
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.3e-19 101.3 224 59.8
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.3e-19 101.3 134 51.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.3e-19 101.3 152 46.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 8.2e-19 98.6 272 54.8
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.1e-18 96.3 253 56.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-17 94.7 273 54.2
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.6e-17 93.6 136 50.0
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.6e-17 93.6 227 61.2
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.4e-17 93.2 255 57.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.5e-16 89.0 232 54.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 8.5e-16 88.6 227 42.7
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.1e-15 88.2 238 57.6
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.8e-13 80.9 145 49.7
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 3.9e-13 79.7 234 37.2
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.5e-12 77.8 245 55.5
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-10 71.2 228 54.4
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.5e-09 67.8 38 84.2
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.5e-09 67.8 220 52.3
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 7.7e-09 65.5 263 39.5
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 6.5e-08 62.4 70 57.1
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.2e-06 58.2 38 71.1
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 3.6e-06 56.6 184 59.2


User provided reference genes

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