Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.1e-58 229.9 131 100.0
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.3e-18 94.0 77 81.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.6e-15 84.0 80 66.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 5.0e-11 71.6 63 55.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 5.0e-11 71.6 90 47.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.4e-10 70.1 88 47.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.5e-10 69.3 84 54.8
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.5e-10 68.2 78 47.4
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.2e-10 67.8 56 58.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 9.3e-10 67.4 77 49.4
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-09 67.0 95 44.2
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-09 66.6 78 47.4
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.6e-09 66.6 75 46.7
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 2.1e-09 66.2 82 62.2
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.1e-09 66.2 33 81.8
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 2.1e-09 66.2 30 93.3
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.7e-09 65.9 61 54.1
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.7e-09 65.9 61 54.1
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.7e-09 65.9 30 93.3
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.6e-09 65.1 30 93.3
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 4.6e-09 65.1 30 90.0
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.0e-08 63.9 30 90.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.0e-08 63.9 82 62.2
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-08 63.9 93 36.6
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.0e-08 63.9 30 90.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.0e-08 63.9 82 46.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.0e-08 63.9 89 41.6
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.0e-08 63.9 30 90.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 83.3
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 90.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.3e-08 63.5 88 58.0
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 1.3e-08 63.5 30 86.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.8e-08 63.2 30 90.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.8e-08 63.2 30 86.7
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.8e-08 63.2 30 86.7
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.8e-08 63.2 30 86.7
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.8e-08 63.2 89 42.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.8e-08 63.2 29 89.7
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.3e-08 62.8 33 78.8
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 2.3e-08 62.8 83 44.6
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 2.3e-08 62.8 30 86.7
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.0e-08 62.4 30 86.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.0e-08 62.4 76 46.1
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.0e-08 62.4 30 86.7
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 3.0e-08 62.4 29 86.2
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.0e-08 62.4 39 71.8
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 83.3
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 3.9e-08 62.0 30 86.7
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.1e-08 61.6 30 83.3
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 5.1e-08 61.6 30 83.3
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 5.1e-08 61.6 30 83.3
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 5.1e-08 61.6 30 86.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 5.1e-08 61.6 90 47.8
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 83.3
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 76.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 80.0
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 83.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 83.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 80.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 83.3
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 80.0
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.7e-08 61.2 35 71.4
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 6.7e-08 61.2 30 80.0
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 8.7e-08 60.8 30 83.3
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 8.7e-08 60.8 30 83.3
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 8.7e-08 60.8 30 83.3
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 8.7e-08 60.8 87 58.6
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 80.0
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.1e-07 60.5 80 48.8
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 76.7
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 83.3
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 76.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 83.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 76.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 83.3
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-07 60.1 28 85.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.5e-07 60.1 28 89.3
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 86.7
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 86.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 76.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 80.0
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.5e-07 60.1 30 76.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-07 59.7 30 76.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.5e-07 59.3 30 80.0
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 2.5e-07 59.3 30 83.3
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.5e-07 59.3 30 80.0
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 3.3e-07 58.9 30 80.0
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 3.3e-07 58.9 30 76.7
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 3.3e-07 58.9 30 80.0
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 3.3e-07 58.9 30 76.7
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 4.3e-07 58.5 30 76.7
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 4.3e-07 58.5 30 76.7
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 4.3e-07 58.5 30 83.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 4.3e-07 58.5 30 83.3
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 5.7e-07 58.2 30 76.7
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 5.7e-07 58.2 30 80.0
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 7.4e-07 57.8 76 53.9
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 7.4e-07 57.8 30 80.0
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.4e-07 57.8 30 83.3
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.4e-07 57.8 89 38.2
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 9.7e-07 57.4 28 78.6
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.3e-06 57.0 30 76.7
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.6e-06 56.6 78 42.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.6e-06 56.6 76 43.4
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.6e-06 56.6 30 73.3
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-06 56.6 89 48.3
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-06 56.6 30 73.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.8e-06 55.8 30 73.3
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.8e-06 55.8 77 40.3
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.8e-06 55.8 77 40.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.8e-06 55.8 30 76.7
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.8e-06 55.8 30 76.7
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.8e-06 55.8 30 76.7
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.7e-06 55.5 75 40.0
Potri.006G050800 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.7e-06 55.5 83 54.2
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 3.7e-06 55.5 30 80.0
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.8e-06 55.1 30 73.3
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.8e-06 55.1 30 73.3
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.8e-06 55.1 30 73.3
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.3e-06 54.7 30 70.0
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 8.2e-06 54.3 30 76.7


User provided reference genes

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