Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.2e-230 801.6 467 100.0
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.5e-99 366.3 427 53.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.9e-98 363.2 493 52.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.0e-95 354.8 478 51.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.0e-95 352.8 479 51.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 5.2e-95 352.4 502 48.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 8.8e-95 351.7 478 45.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.2e-94 351.3 487 49.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.0e-94 350.5 477 45.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.3e-93 347.8 483 44.5
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-93 347.4 491 43.8
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.9e-93 345.9 495 50.5
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.3e-93 345.1 488 46.7
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.1e-92 344.7 455 48.6
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 5.4e-92 342.4 454 46.5
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.0e-92 342.0 509 47.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.2e-91 341.3 507 49.3
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 8.6e-90 335.1 506 52.6
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-89 334.0 469 43.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.2e-89 332.0 465 48.6
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 7.2e-89 332.0 460 50.2
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.8e-87 327.4 464 46.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-87 327.0 485 45.2
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 3.0e-87 326.6 479 44.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 6.8e-87 325.5 422 46.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 6.8e-87 325.5 510 46.7
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.2e-86 324.7 486 46.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.0e-86 323.9 487 46.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 2.6e-86 323.6 484 46.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.4e-86 323.2 494 47.2
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.8e-86 321.6 481 44.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 9.8e-86 321.6 489 52.1
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 9.8e-86 321.6 446 47.5
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.3e-85 321.2 483 45.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 2.2e-85 320.5 349 52.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.9e-85 320.1 473 52.0
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.3e-85 318.5 481 44.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 8.3e-85 318.5 516 44.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.8e-84 317.4 506 45.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.8e-84 317.4 404 48.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.1e-84 316.2 422 46.9
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.6e-83 314.3 471 47.1
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.6e-83 314.3 322 53.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.6e-83 314.3 485 42.7
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 4.6e-83 312.8 448 43.5
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.9e-83 312.4 472 46.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-82 311.2 506 45.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.9e-82 310.1 461 47.5
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.9e-82 310.1 506 48.0
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 3.9e-82 309.7 484 41.9
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.0e-82 309.3 445 42.2
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.5e-81 307.8 447 41.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.9e-81 307.4 396 46.7
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.5e-81 307.0 483 42.2
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.5e-81 307.0 444 40.8
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.3e-81 305.4 450 42.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 7.3e-81 305.4 444 42.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 7.3e-81 305.4 465 43.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.6e-80 304.3 318 54.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.2e-80 302.4 508 45.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 8.0e-80 302.0 325 54.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.8e-79 300.8 508 45.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.8e-79 300.8 491 46.0
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.1e-79 300.1 419 44.9
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 8.9e-79 298.5 407 45.7
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 8.9e-79 298.5 413 45.8
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.0e-78 297.4 477 44.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 3.4e-78 296.6 445 43.1
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 9.8e-78 295.0 389 47.6
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.3e-77 294.7 325 53.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.2e-77 293.9 399 45.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.2e-77 293.9 324 53.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 4.9e-77 292.7 395 45.8
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.4e-76 291.2 410 45.1
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.6e-75 287.7 357 48.7
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.5e-75 286.6 478 40.4
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.0e-74 283.5 472 43.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.0e-74 283.5 470 42.3
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 6.6e-74 282.3 475 42.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 4.3e-73 279.6 473 40.8
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 7.3e-73 278.9 390 44.9
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.2e-72 278.1 475 39.8
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.6e-72 277.7 470 44.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.1e-72 275.4 320 47.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.1e-71 275.0 453 43.9
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.4e-71 274.6 442 41.0
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 8.9e-71 271.9 462 39.8
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 8.9e-71 271.9 462 39.8
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 8.9e-71 271.9 462 39.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 8.9e-71 271.9 391 45.0
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-70 270.8 408 42.9
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.6e-70 270.4 320 46.2
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.5e-70 268.9 467 41.8
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 7.5e-70 268.9 306 49.0
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 9.8e-70 268.5 468 40.6
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 9.8e-70 268.5 468 40.6
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 9.8e-70 268.5 468 40.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.4e-68 263.8 401 42.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.2e-68 263.5 346 44.8
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.1e-68 263.1 404 42.8
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 5.4e-68 262.7 446 38.8
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.7e-67 260.4 476 39.1
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.3e-66 258.1 391 41.2
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.9e-66 256.5 358 43.6
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.9e-66 256.5 348 41.1
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 6.6e-66 255.8 338 45.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 8.6e-66 255.4 476 39.5
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.5e-65 254.6 405 44.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-65 254.6 446 38.6
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 3.3e-65 253.4 388 41.2
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.6e-65 252.7 324 44.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-64 250.8 486 37.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.1e-64 250.8 486 37.7
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 4.7e-64 249.6 324 45.1
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 5.2e-63 246.1 467 39.0
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 2.6e-62 243.8 319 43.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.4e-62 243.0 392 40.1
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 7.6e-62 242.3 410 39.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.3e-61 241.5 317 45.7
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.7e-61 241.1 338 42.6
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.2e-61 240.7 425 36.5
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.9e-61 240.4 325 43.4
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.1e-60 238.4 327 44.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.4e-60 237.3 405 38.0
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.6e-59 234.6 380 38.2
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.1e-59 234.2 310 45.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.6e-58 228.8 317 43.8
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 4.3e-57 226.5 454 37.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.3e-57 226.5 380 37.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 5.8e-54 216.1 473 39.5
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 9.9e-54 215.3 291 46.7
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 2.2e-53 214.2 396 37.6
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.3e-50 204.9 258 45.0
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.9e-50 203.4 398 35.7
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.3e-49 199.9 398 35.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.3e-49 199.1 273 42.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.8e-48 197.2 389 39.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.1e-47 195.3 172 61.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.8e-47 194.5 442 34.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.8e-47 194.5 442 34.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.6e-43 181.4 302 40.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-40 171.4 258 43.0
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-39 167.5 372 32.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-38 164.5 242 41.3
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.3e-36 155.6 398 31.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.7e-35 154.1 231 40.7
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.9e-35 152.5 421 29.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 9.6e-33 145.6 329 33.7
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.8e-32 144.1 197 42.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.7e-32 143.7 197 42.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 6.9e-31 139.4 409 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 7.6e-30 136.0 409 28.9
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.1e-27 127.9 314 30.3
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.5e-25 120.9 225 34.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.1e-24 117.9 120 51.7
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.4e-23 114.4 167 42.5
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.6e-19 100.1 114 49.1
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 7.4e-17 92.8 140 40.7
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 8.2e-16 89.4 90 50.0
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 8.8e-10 69.3 45 75.6
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 2.8e-08 64.3 150 32.7
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.1e-07 60.8 55 43.6


User provided reference genes

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