Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 3.5e-239 831.2 428 100.0
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.6e-199 699.5 428 83.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 7.4e-197 690.6 428 81.8
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.7e-196 688.3 428 81.3
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.2e-194 683.3 428 80.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.5e-194 682.9 428 81.5
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.5e-194 682.9 428 80.4
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.6e-194 682.2 429 80.4
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.4e-194 681.8 429 79.5
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.5e-194 681.4 430 81.9
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.5e-194 681.4 428 81.5
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 7.6e-194 680.6 428 81.1
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.3e-193 679.9 428 81.1
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.9e-192 676.0 428 80.1
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.9e-192 676.0 431 80.5
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.9e-192 676.0 389 85.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.2e-192 674.9 428 80.6
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.6e-191 672.9 428 80.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.6e-191 672.9 428 79.4
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 2.1e-191 672.5 428 79.2
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.1e-191 672.5 429 80.2
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 2.1e-191 672.5 428 79.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.7e-191 672.2 430 80.5
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-191 672.2 428 79.7
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.5e-191 671.8 431 78.7
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.5e-191 671.8 430 78.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.6e-191 671.4 431 78.4
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 4.6e-191 671.4 428 79.0
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.3e-190 669.8 428 79.0
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.8e-190 669.5 392 83.9
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.8e-190 669.5 429 79.7
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.3e-190 669.1 428 79.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.3e-190 669.1 428 78.7
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.1e-190 667.9 428 78.5
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.9e-189 666.0 428 79.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 7.4e-189 664.1 428 79.0
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.6e-188 662.9 428 78.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.6e-188 662.9 428 79.0
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 2.8e-188 662.1 429 78.3
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.8e-188 661.4 392 81.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 4.8e-188 661.4 429 78.3
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-187 660.2 429 77.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.3e-187 657.9 428 78.5
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 5.3e-187 657.9 428 78.0
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 6.9e-187 657.5 430 78.6
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 6.9e-187 657.5 432 77.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.2e-186 656.8 392 83.4
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.6e-186 655.6 428 77.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.8e-186 654.4 429 77.9
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.3e-185 653.3 417 77.9
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.7e-185 652.9 430 77.4
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.7e-185 652.9 430 76.7
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.2e-185 652.5 428 78.0
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.9e-185 652.1 428 78.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 4.2e-184 648.3 440 76.1
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 4.2e-184 648.3 431 76.8
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 4.2e-184 648.3 428 78.0
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 3.5e-183 645.2 428 76.2
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 7.9e-183 644.0 441 76.0
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.0e-182 643.7 431 75.4
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.3e-182 643.3 432 75.0
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.8e-182 642.9 431 75.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.8e-182 642.9 392 80.1
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.8e-182 642.9 394 80.7
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.3e-182 642.5 428 75.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.3e-182 642.5 392 80.4
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.0e-182 642.1 432 75.0
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.9e-182 641.7 431 76.3
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 3.9e-182 641.7 429 76.7
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 5.1e-182 641.3 392 80.4
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 2.5e-181 639.0 428 75.7
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 3.3e-181 638.6 429 76.2
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 4.3e-181 638.3 428 75.0
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 5.7e-181 637.9 428 75.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 5.7e-181 637.9 428 75.5
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 7.4e-181 637.5 430 75.6
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 7.4e-181 637.5 428 75.0
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 9.7e-181 637.1 428 75.7
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.3e-180 636.7 428 75.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.3e-180 636.7 413 78.2
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.8e-180 635.6 428 75.5
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.7e-180 635.2 430 75.1
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-180 635.2 430 75.1
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.7e-180 635.2 430 75.1
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.7e-180 635.2 432 75.5
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 4.8e-180 634.8 428 75.5
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 4.8e-180 634.8 412 78.2
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 4.8e-180 634.8 431 74.2
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 4.8e-180 634.8 429 76.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 6.3e-180 634.4 428 74.8
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 6.3e-180 634.4 429 74.6
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 6.3e-180 634.4 407 77.9
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.2e-180 634.0 432 75.7
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.1e-179 633.6 374 84.2
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.4e-179 632.5 428 75.9
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-179 632.1 432 75.0
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.9e-179 630.9 413 76.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 9.0e-179 630.6 428 74.8
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 4.5e-178 628.2 428 74.8
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 7.7e-178 627.5 408 78.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.5e-176 622.5 431 75.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.2e-175 620.2 410 77.6
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.1e-175 619.4 372 82.8
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 3.6e-175 618.6 410 78.3
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.9e-175 617.5 429 72.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.0e-174 617.1 431 73.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.4e-174 616.7 377 79.8
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 3.9e-174 615.1 385 79.0
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 3.3e-173 612.1 385 78.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.4e-173 610.9 434 72.1
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.8e-172 609.0 428 72.9
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.7e-172 608.6 413 75.5
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.8e-172 608.2 385 78.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.8e-171 606.3 392 77.8
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.4e-171 605.9 384 78.6
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 5.3e-171 604.7 411 74.9
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 8.5e-169 597.4 479 66.0
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.2e-168 595.1 354 82.5
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 7.2e-168 594.3 431 71.5
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 9.4e-168 594.0 428 71.7
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 2.1e-167 592.8 335 86.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.9e-166 588.6 428 69.6
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 6.7e-166 587.8 392 75.0
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 3.3e-165 585.5 417 73.6
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.8e-164 582.4 428 70.6
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-164 582.0 428 71.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 3.7e-164 582.0 457 68.3
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.8e-163 579.7 404 70.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.9e-160 569.7 379 76.5
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.9e-158 562.0 442 68.1
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.6e-154 549.3 374 70.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.6e-154 549.3 398 68.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.0e-153 547.4 322 82.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 3.8e-153 545.4 432 65.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 7.2e-152 541.2 441 68.0
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.7e-151 538.5 320 81.9
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.7e-148 528.9 404 65.8
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.8e-147 526.6 366 73.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 2.1e-143 513.1 415 66.3
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.7e-143 512.7 400 66.0
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-142 510.4 374 71.9
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.3e-142 509.6 424 65.8
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.8e-139 500.0 399 62.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.1e-135 485.0 333 74.5
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 4.0e-134 482.3 433 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.2e-134 481.9 405 61.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.8e-132 476.1 407 61.2
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.6e-127 460.3 369 65.3
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.4e-117 425.6 241 85.1
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.0e-113 412.9 335 63.3
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.1e-110 402.9 271 73.1
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.0e-106 388.7 231 82.3
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 7.6e-101 371.7 211 87.2
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 5.6e-96 355.5 390 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.1e-95 351.7 409 48.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 6.2e-87 325.5 391 48.1
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 9.0e-86 321.6 273 59.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 8.4e-84 315.1 354 54.5
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 6.9e-78 295.4 196 71.9
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.2e-67 260.0 151 82.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 9.7e-64 248.4 308 44.2
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 9.7e-64 248.4 302 47.7
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.1e-62 245.0 222 58.6
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.7e-60 237.7 214 58.4
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 6.7e-57 225.7 304 41.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.0e-53 214.2 429 37.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.5e-51 207.2 120 80.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.6e-50 203.4 181 60.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.1e-34 151.0 134 61.9
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.1e-30 138.7 88 80.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.2e-29 135.2 85 76.5
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.6e-26 124.8 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.0e-20 103.2 75 64.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 5.5e-19 99.8 61 73.8
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.6e-18 98.2 84 57.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 4.0e-17 93.6 124 46.8
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.2e-17 93.2 54 74.1
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 3.7e-15 87.0 55 70.9
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 9.2e-14 82.4 123 42.3
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.3e-12 77.8 60 61.7
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 9.5e-11 72.4 94 50.0
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 9.8e-08 62.4 88 48.9
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 8.3e-07 59.3 55 56.4


User provided reference genes

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