Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 4.3e-134 481.5 273 100.0
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 7.3e-73 278.1 269 63.2
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 7.3e-73 278.1 269 63.2
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 2.1e-72 276.6 267 62.9
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 8.0e-72 274.6 269 63.2
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 4.0e-71 272.3 273 58.2
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 1.2e-67 260.8 267 60.7
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 2.0e-67 260.0 266 58.6
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 2.0e-67 260.0 267 61.4
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 3.5e-67 259.2 262 61.8
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 1.3e-66 257.3 267 58.8
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.7e-66 256.9 268 59.0
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 1.5e-65 253.8 268 60.4
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 5.6e-65 251.9 268 59.3
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 3.6e-64 249.2 267 59.2
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 3.6e-64 249.2 267 58.1
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 2.3e-63 246.5 261 59.4
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.5e-62 243.8 267 58.1
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 3.4e-62 242.7 267 58.8
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 1.1e-60 237.7 268 54.9
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 1.1e-60 237.7 270 54.4
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 4.1e-60 235.7 298 52.0
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 5.4e-60 235.3 267 54.7
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 7.1e-60 235.0 267 56.9
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 3.5e-59 232.6 267 54.7
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 1.3e-58 230.7 267 54.3
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 3.0e-58 229.6 267 56.6
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 5.1e-58 228.8 266 56.4
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 6.6e-58 228.4 267 54.7
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 8.6e-58 228.0 275 52.4
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.5e-57 227.3 270 54.1
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.5e-57 227.3 261 55.2
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.5e-57 227.3 267 53.9
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 1.9e-57 226.9 267 56.2
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 3.3e-57 226.1 267 53.2
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 3.6e-56 222.6 270 53.3
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 3.6e-56 222.6 266 54.5
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 3.6e-56 222.6 260 54.6
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 1.8e-55 220.3 266 54.1
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 3.1e-55 219.5 258 55.8
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 4.0e-55 219.2 265 54.7
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.2e-54 217.6 262 52.7
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 2.0e-54 216.9 271 52.4
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.6e-54 216.5 260 53.5
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 1.1e-52 211.1 268 52.6
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 1.4e-52 210.7 267 51.7
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 1.6e-51 207.2 277 50.9
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 4.6e-51 205.7 260 50.4
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 7.8e-51 204.9 263 51.7
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.0e-50 204.5 267 50.6
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 3.0e-50 203.0 267 48.7
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 3.0e-50 203.0 260 50.0
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 8.6e-50 201.4 258 50.4
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 1.5e-49 200.7 261 53.3
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 1.9e-49 200.3 266 51.1
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 4.3e-49 199.1 261 49.4
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 4.3e-49 199.1 260 50.8
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 7.3e-49 198.4 201 60.2
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 2.1e-48 196.8 268 49.6
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 2.8e-48 196.4 267 51.3
vmacro05229 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 3.6e-48 196.1 193 63.2
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 4.7e-48 195.7 267 50.6
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 8.1e-48 194.9 260 49.6
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 8.1e-48 194.9 260 49.6
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 1.1e-47 194.5 260 48.5
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 4.0e-47 192.6 267 48.7
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 1.2e-46 191.0 266 48.1
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 1.2e-46 191.0 268 48.5
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 1.7e-45 187.2 260 47.7
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 1.9e-44 183.7 260 45.8
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 2.7e-43 179.9 266 47.4
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 3.5e-43 179.5 222 53.6
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.3e-40 171.0 268 46.6
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 3.6e-40 169.5 279 41.9
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 4.0e-39 166.0 249 47.8
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 4.0e-39 166.0 266 46.2
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 5.8e-38 162.2 269 45.4
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 2.4e-36 156.8 263 43.3
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 2.4e-36 156.8 267 43.8
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 7.1e-36 155.2 266 45.9
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 2.1e-35 153.7 266 43.6
Sabra13G0113100 Salix brachista HOM05D000009 ORTHO05D000008 2.1e-35 153.7 254 47.2
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 8.7e-34 148.3 260 41.9
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 1.1e-33 147.9 260 41.9
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 8.1e-32 141.7 206 48.1
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 4.0e-31 139.4 253 41.9
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 1.5e-30 137.5 241 42.3
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 1.7e-29 134.0 260 39.2
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.3e-24 117.9 157 47.8
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 4.8e-24 115.9 268 37.7
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 6.2e-24 115.5 156 46.2
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.4e-23 113.6 188 41.5
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 6.9e-23 112.1 281 32.0
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 2.6e-22 110.2 262 37.8
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.6e-22 110.2 245 37.6
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.2e-20 102.8 221 37.1
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 3.5e-19 99.8 145 43.4
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 2.3e-18 97.1 232 34.5
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 2.5e-17 93.6 220 35.9
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 7.6e-14 82.0 134 47.0
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 7.6e-14 82.0 82 64.6
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 7.6e-14 82.0 82 64.6
BcaC07g42757 Brassica carinata HOM05D000240 ORTHO05D002608 6.5e-13 79.0 88 55.7
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 7.1e-12 75.5 64 68.8
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 2.7e-11 73.6 64 67.2
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 6.1e-11 72.4 72 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3512 Anthoceros agrestis HOM05D000240 ORTHO05D002608 7.9e-11 72.0 221 32.6
Pp3c6_21870 Physcomitrium patens HOM05D000240 ORTHO05D002608 2.4e-07 60.5 289 26.6
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 3.1e-07 60.1 50 68.0
Cre13.g568450 Chlamydomonas reinhardtii HOM05D000240 ORTHO05D002608 9.0e-07 58.5 113 31.9


User provided reference genes

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