Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.5e-83 312.8 156 100.0
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.5e-26 121.3 149 53.0
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.8e-23 113.2 143 51.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.2e-21 106.3 155 47.7
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.2e-21 104.4 140 49.3
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 7.0e-20 101.3 146 47.9
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-19 100.5 177 40.1
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.2e-19 100.5 168 45.2
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.5e-19 100.1 153 46.4
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 2.0e-19 99.8 171 40.4
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.5e-19 99.0 159 44.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.5e-19 98.6 154 43.5
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.0e-18 97.4 155 42.6
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.7e-18 96.7 144 45.1
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.9e-18 95.9 154 44.2
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.8e-18 95.5 149 45.6
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.5e-18 94.7 156 45.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.1e-17 94.0 156 42.9
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.4e-17 93.6 145 46.2
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.9e-17 93.2 165 40.0
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 3.2e-17 92.4 144 43.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 5.5e-17 91.7 166 41.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.5e-17 91.7 148 41.9
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 9.4e-17 90.9 178 37.6
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.6e-16 90.1 151 41.7
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.6e-16 90.1 132 43.2
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 6.1e-16 88.2 151 45.0
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.0e-16 87.8 145 39.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.9e-15 85.5 92 55.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 6.7e-15 84.7 141 43.3
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.0e-14 83.2 69 66.7
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 7.4e-14 81.3 177 37.3
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.3e-13 80.5 164 39.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.2e-13 79.7 146 38.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.8e-13 79.3 61 65.6
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 2.8e-13 79.3 120 43.3
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.8e-13 79.3 163 38.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 6.3e-13 78.2 151 36.4
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.3e-13 78.2 68 57.4
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.3e-13 78.2 62 67.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.1e-12 77.4 59 64.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.4e-12 77.0 163 39.9
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.4e-12 77.0 149 38.3
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.1e-12 75.9 75 56.0
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 4.1e-12 75.5 153 39.2
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 4.1e-12 75.5 167 36.5
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.5e-11 72.4 152 40.8
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.5e-11 72.4 157 36.9
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.5e-11 72.0 150 38.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.7e-11 71.2 152 37.5
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.0e-10 70.9 61 65.6
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.0e-10 70.9 117 41.9
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.9e-10 69.3 147 43.5
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 2.9e-10 69.3 153 37.9
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 5.0e-10 68.6 143 39.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 5.0e-10 68.6 154 37.0
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 5.0e-10 68.6 160 33.8
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 8.5e-10 67.8 158 35.4
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.1e-09 67.4 38 84.2
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 1.1e-09 67.4 147 38.8
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-09 66.6 147 42.2
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.9e-09 66.6 148 35.8
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 1.9e-09 66.6 74 48.6
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 2.5e-09 66.2 160 33.1
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 5.5e-09 65.1 57 61.4
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 5.5e-09 65.1 138 39.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 9.4e-09 64.3 53 64.2
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.1e-08 63.2 65 53.8
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.7e-08 62.8 58 60.3
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 6.1e-08 61.6 146 34.9
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 6.1e-08 61.6 48 64.6
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 6.1e-08 61.6 149 40.3
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.1e-08 61.6 66 51.5
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 6.1e-08 61.6 41 78.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.1e-08 61.6 57 61.4
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.0e-08 61.2 66 51.5
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.0e-08 61.2 66 51.5
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.0e-07 60.8 51 62.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.0e-07 60.8 46 71.7
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.0e-07 60.8 54 61.1
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.4e-07 60.5 58 50.0
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.4e-07 60.5 55 61.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.4e-07 60.5 52 59.6
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.8e-07 60.1 135 37.8
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.8e-07 60.1 135 37.8
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.8e-07 60.1 78 47.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.8e-07 60.1 85 47.1
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.3e-07 59.7 82 47.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.3e-07 59.7 106 44.3
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 3.0e-07 59.3 73 46.6
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.0e-07 59.3 128 40.6
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.0e-07 59.3 133 36.1
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-07 59.3 106 44.3
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.0e-07 59.3 61 59.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.0e-07 59.3 71 50.7
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.0e-07 59.3 50 60.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.0e-07 59.3 75 48.0
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 4.0e-07 58.9 48 64.6
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 4.0e-07 58.9 75 50.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.0e-07 58.9 64 56.2
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.0e-07 58.9 49 65.3
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-07 58.9 151 33.1
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.0e-07 58.9 106 44.3
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.0e-07 58.9 46 69.6
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 4.0e-07 58.9 63 57.1
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-07 58.5 109 42.2
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 5.2e-07 58.5 66 51.5
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-07 58.5 66 51.5
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 5.2e-07 58.5 45 62.2
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 5.2e-07 58.5 69 47.8
Sc19g0008170 Simmondsia chinensis HOM05D015198 ORTHO05D002992 6.7e-07 58.2 49 63.3
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 6.7e-07 58.2 58 60.3
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 6.7e-07 58.2 69 49.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 8.8e-07 57.8 61 55.7
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 8.8e-07 57.8 61 55.7
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 8.8e-07 57.8 126 38.1
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 8.8e-07 57.8 76 43.4
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.2e-06 57.4 56 55.4
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.2e-06 57.4 47 61.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.2e-06 57.4 46 63.0
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.2e-06 57.4 140 37.1
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.5e-06 57.0 145 37.2
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.0e-06 56.6 79 46.8
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-06 56.6 61 57.4
CsaV3_3G040160 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.0e-06 56.6 31 83.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.0e-06 56.6 150 34.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 2.0e-06 56.6 150 32.7
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 2.0e-06 56.6 47 59.6
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.0e-06 56.6 47 59.6
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.0e-06 56.6 52 55.8
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 2.0e-06 56.6 144 34.7
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.6e-06 56.2 49 61.2
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 2.6e-06 56.2 49 61.2
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 49 61.2
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 84 46.4
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 51 64.7
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 2.6e-06 56.2 49 61.2
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 2.6e-06 56.2 49 59.2
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.6e-06 56.2 84 46.4
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.6e-06 56.2 47 59.6
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 3.3e-06 55.8 137 35.8
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 3.3e-06 55.8 84 46.4
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-06 55.8 49 61.2
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 3.3e-06 55.8 84 46.4
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 3.3e-06 55.8 49 61.2
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 3.3e-06 55.8 89 46.1
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 3.3e-06 55.8 50 54.0
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.3e-06 55.8 81 45.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.3e-06 55.8 81 45.7
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.4e-06 55.5 79 45.6
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.4e-06 55.5 85 38.8
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 4.4e-06 55.5 69 47.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 4.4e-06 55.5 140 36.4
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 47 68.1
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 5.7e-06 55.1 48 60.4
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 5.7e-06 55.1 47 68.1
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 5.7e-06 55.1 46 58.7
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.7e-06 55.1 51 52.9
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 62 46.8
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 62 46.8
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 7.5e-06 54.7 53 60.4
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 7.5e-06 54.7 53 60.4
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 7.5e-06 54.7 54 57.4
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 7.5e-06 54.7 54 57.4
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 7.5e-06 54.7 53 60.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 7.5e-06 54.7 43 62.8
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 7.5e-06 54.7 48 58.3
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 7.5e-06 54.7 47 59.6
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 7.5e-06 54.7 90 40.0
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.7e-06 54.3 151 31.8
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 9.7e-06 54.3 55 54.5
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.7e-06 54.3 55 52.7
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 9.7e-06 54.3 49 53.1
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 9.7e-06 54.3 49 57.1


User provided reference genes

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