Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.1e-95 353.6 229 100.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 8.3e-22 108.2 130 54.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.4e-21 106.7 148 48.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.1e-21 105.9 248 38.3
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 7.1e-21 105.1 248 37.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.2e-20 104.4 252 40.9
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.2e-20 104.4 154 48.7
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 2.7e-20 103.2 245 39.6
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 7.8e-20 101.7 245 39.2
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 7.8e-20 101.7 245 39.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 7.8e-20 101.7 245 37.6
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.0e-19 101.3 250 42.0
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.0e-19 101.3 161 44.1
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.3e-19 100.9 238 37.0
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 2.3e-19 100.1 245 38.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 2.3e-19 100.1 245 38.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 2.3e-19 100.1 261 35.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 5.1e-19 99.0 146 47.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 6.6e-19 98.6 158 43.7
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 8.6e-19 98.2 146 47.3
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.5e-18 96.7 162 42.6
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.3e-18 96.3 235 35.7
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.3e-18 95.9 81 67.9
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.6e-18 95.5 139 48.2
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 7.3e-18 95.1 242 34.7
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-17 94.4 129 48.8
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 2.1e-17 93.6 149 46.3
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.8e-17 93.2 134 44.0
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 4.7e-17 92.4 133 46.6
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 6.2e-17 92.0 138 44.2
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.4e-16 90.9 157 43.9
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.4e-16 90.1 236 34.3
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 4.0e-16 89.4 129 41.9
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 4.0e-16 89.4 147 44.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 4.0e-16 89.4 133 43.6
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 5.2e-16 89.0 142 45.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 5.2e-16 89.0 249 39.4
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 5.2e-16 89.0 138 45.7
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 6.8e-16 88.6 243 34.2
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 6.8e-16 88.6 123 48.0
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 8.9e-16 88.2 243 34.2
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.2e-15 87.8 126 46.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.2e-15 87.8 247 34.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 2.6e-15 86.7 135 45.2
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-15 86.7 232 39.2
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.6e-15 86.7 228 36.4
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 2.6e-15 86.7 147 45.6
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 2.6e-15 86.7 251 38.2
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.8e-15 85.5 232 39.2
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 7.6e-15 85.1 244 33.2
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 7.6e-15 85.1 244 33.2
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 7.6e-15 85.1 244 33.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 7.6e-15 85.1 233 35.2
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.6e-15 85.1 139 43.9
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 7.6e-15 85.1 248 35.1
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.6e-15 85.1 150 42.0
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 9.9e-15 84.7 137 46.0
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 9.9e-15 84.7 181 36.5
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.3e-14 84.3 232 39.2
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.3e-14 84.3 139 43.9
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.7e-14 84.0 240 38.3
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.2e-14 83.6 126 49.2
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.2e-14 83.6 157 43.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.9e-14 83.2 237 33.3
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.9e-14 83.2 258 32.9
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 4.9e-14 82.4 122 44.3
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 6.4e-14 82.0 149 41.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 8.4e-14 81.6 150 43.3
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.1e-13 81.3 150 42.0
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.2e-13 79.7 140 42.1
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 3.2e-13 79.7 260 33.8
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 4.2e-13 79.3 247 33.2
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.2e-13 79.3 236 35.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.2e-13 79.3 137 42.3
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.2e-13 79.3 256 32.4
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 5.4e-13 79.0 256 36.7
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.4e-13 79.0 245 32.7
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 5.4e-13 79.0 142 44.4
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.1e-13 78.6 141 41.8
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 9.3e-13 78.2 144 43.8
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 9.3e-13 78.2 136 44.1
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.2e-12 77.8 233 34.3
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.2e-12 77.8 243 33.3
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.2e-12 77.8 136 43.4
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.1e-12 77.0 76 61.8
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-12 77.0 128 42.2
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 2.7e-12 76.6 138 40.6
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 2.7e-12 76.6 259 30.9
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.7e-12 76.6 258 31.0
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.7e-12 76.6 251 33.5
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.5e-12 76.3 130 42.3
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 7.8e-12 75.1 149 42.3
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.0e-11 74.7 257 30.7
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.0e-11 74.7 247 33.2
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.3e-11 74.3 129 41.9
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.7e-11 73.9 245 38.4
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.7e-11 73.9 132 41.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.3e-11 73.6 145 36.6
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 2.3e-11 73.6 145 36.6
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 2.3e-11 73.6 145 36.6
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 3.0e-11 73.2 124 46.8
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.1e-11 72.4 256 30.5
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 6.6e-11 72.0 145 37.9
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 6.6e-11 72.0 130 42.3
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.7e-11 71.6 124 42.7
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.7e-11 71.6 130 46.2
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.1e-10 71.2 130 45.4
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.5e-10 70.9 127 40.2
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-10 70.5 245 33.5
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 1.9e-10 70.5 121 43.0
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 2.5e-10 70.1 130 40.0
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 3.3e-10 69.7 127 48.8
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 3.3e-10 69.7 125 43.2
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.3e-10 69.3 133 42.1
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 4.3e-10 69.3 125 43.2
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 5.6e-10 68.9 134 39.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.3e-10 68.6 254 30.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 7.3e-10 68.6 124 38.7
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 9.6e-10 68.2 263 31.9
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.3e-09 67.8 131 38.9
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.3e-09 67.8 119 42.0
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.6e-09 67.4 128 39.1
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.1e-09 67.0 153 35.9
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 3.6e-09 66.2 87 51.7
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.6e-09 66.2 141 36.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 3.6e-09 66.2 124 41.1
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 4.8e-09 65.9 143 35.7
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.8e-09 65.9 236 30.5
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.8e-09 65.9 123 43.1
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 6.2e-09 65.5 139 35.3
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.1e-08 64.7 139 36.7
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.4e-08 64.3 143 37.1
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-08 63.9 126 41.3
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-08 63.9 129 41.9
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.4e-08 63.5 87 48.3
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.4e-08 63.5 139 36.0
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.1e-08 63.2 133 42.1
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 3.1e-08 63.2 127 35.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.1e-08 63.2 252 32.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 6.9e-08 62.0 124 41.1
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.0e-07 60.5 53 58.5
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 4.4e-07 59.3 134 44.0
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 4.4e-07 59.3 139 38.1
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 5.8e-07 58.9 195 32.8
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 7.6e-07 58.5 261 30.7
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 9.9e-07 58.2 139 39.6
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.9e-07 58.2 76 43.4
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.3e-06 57.8 79 49.4
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.9e-06 56.6 178 32.0
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.8e-06 56.2 75 45.3
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 8.4e-06 55.1 108 40.7


User provided reference genes

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