Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 5.1e-243 844.0 419 100.0
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 9.2e-176 620.5 390 76.2
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 9.2e-176 620.5 414 74.2
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.2e-175 620.2 391 76.5
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.0e-175 619.4 394 75.6
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 7.8e-175 617.5 397 75.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 3.8e-174 615.1 391 74.9
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 3.3e-173 612.1 391 75.2
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.3e-173 611.7 404 72.8
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 9.5e-173 610.5 390 75.4
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 8.0e-172 607.4 391 73.9
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.3e-171 605.9 390 76.2
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.2e-170 603.6 391 74.7
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 7.5e-170 600.9 391 73.1
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 2.9e-169 599.0 390 74.1
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 3.7e-169 598.6 391 73.9
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 4.9e-169 598.2 412 70.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 8.3e-169 597.4 390 72.8
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.4e-168 596.7 390 74.1
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.8e-168 596.3 391 73.4
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.2e-168 595.5 411 69.3
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 4.1e-168 595.1 390 73.6
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.1e-168 595.1 409 69.9
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 9.2e-168 594.0 391 72.9
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 5.9e-167 591.3 390 73.1
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.3e-166 590.1 397 72.8
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.7e-166 589.7 395 72.7
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 3.0e-166 589.0 390 72.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 3.0e-166 589.0 416 69.7
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 5.0e-166 588.2 391 71.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.9e-165 586.3 410 70.5
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 2.5e-165 585.9 397 71.8
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 5.6e-165 584.7 405 69.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 5.6e-165 584.7 397 71.5
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 5.6e-165 584.7 391 71.9
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 7.3e-165 584.3 391 71.9
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 9.5e-165 583.9 394 71.8
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.6e-164 583.2 400 70.0
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.0e-163 580.5 418 68.7
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.8e-163 579.7 393 71.8
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 8.9e-163 577.4 391 70.6
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 1.5e-162 576.6 390 71.3
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-162 576.2 390 70.8
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 3.4e-162 575.5 397 70.8
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 7.5e-162 574.3 410 67.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.7e-161 573.2 422 69.0
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.7e-161 573.2 392 71.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 4.9e-161 571.6 396 71.0
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 6.4e-161 571.2 422 68.7
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 8.3e-161 570.9 392 70.9
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 4.1e-160 568.5 390 69.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.6e-159 566.6 386 71.2
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 2.7e-159 565.8 392 70.4
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-158 563.5 414 66.7
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 3.9e-158 562.0 413 68.0
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 5.0e-158 561.6 407 68.8
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 2.5e-157 559.3 392 68.4
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 4.3e-157 558.5 426 64.6
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 7.3e-157 557.8 451 62.3
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 9.5e-157 557.4 394 68.0
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.2e-156 557.0 394 68.5
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.8e-156 555.8 407 67.6
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 3.6e-156 555.4 391 68.8
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 8.1e-156 554.3 428 64.3
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 3.1e-155 552.4 390 69.0
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 4.0e-155 552.0 418 64.4
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 5.2e-155 551.6 432 65.0
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 1.5e-154 550.1 410 66.3
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.5e-154 550.1 404 66.6
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.0e-154 549.7 410 66.6
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 2.6e-154 549.3 410 67.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 2.6e-154 549.3 410 67.3
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.6e-154 549.3 391 66.8
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 5.8e-154 548.1 390 68.7
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 9.8e-154 547.4 417 64.7
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 3.7e-153 545.4 399 66.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.4e-152 542.7 425 65.2
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 9.2e-152 540.8 418 65.3
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.5e-151 538.9 383 69.2
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.0e-150 537.3 399 67.9
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.8e-145 518.8 410 64.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.5e-143 512.3 410 63.7
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 4.6e-143 511.9 400 65.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.8e-140 502.7 434 58.5
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 4.0e-139 498.8 391 62.7
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.2e-138 497.3 329 72.0
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 3.2e-136 489.2 381 65.4
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.3e-133 479.2 331 70.4
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.3e-129 467.2 330 67.0
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.3e-129 467.2 320 71.9
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.6e-124 450.3 311 71.7
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 4.8e-124 448.7 309 71.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 6.2e-124 448.4 390 58.5
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 3.5e-119 432.6 280 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 3.9e-118 429.1 412 53.9
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 6.7e-118 428.3 392 53.6
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.1e-115 419.5 343 63.3
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-111 407.5 321 64.8
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 3.1e-107 392.9 291 66.0
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 5.3e-107 392.1 288 66.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.3e-107 392.1 313 63.6
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.6e-106 388.3 409 49.1
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.8e-105 386.0 290 63.8
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 6.5e-105 385.2 356 53.9
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-93 347.4 384 49.5
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.4e-91 340.9 242 69.0
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 5.3e-91 339.0 469 43.5
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 2.6e-90 336.7 214 73.8
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.7e-90 335.1 239 65.7
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 2.9e-89 333.2 238 67.2
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 9.7e-77 291.6 188 70.2
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 4.1e-75 286.2 351 47.3
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.3e-57 228.0 148 73.6
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 8.6e-57 225.3 189 63.0
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 6.1e-55 219.2 155 69.7
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.0e-54 216.5 405 37.8
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 5.8e-53 212.6 250 45.6
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.6e-50 204.5 155 66.5
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.6e-49 198.7 146 65.8
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.8e-47 193.7 154 61.7
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.3e-40 169.9 122 68.9
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.8e-38 164.5 418 29.4
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 9.9e-37 158.7 423 29.3
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 9.9e-37 158.7 432 29.6
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 8.3e-36 155.6 425 29.4
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.9e-35 154.5 423 29.6
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-28 131.7 87 70.1
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.4e-27 126.3 80 73.8
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 7.1e-27 125.9 83 69.9
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 7.8e-26 122.5 114 51.8
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.4e-22 111.7 274 30.7
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.4e-21 107.1 245 34.3
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 5.4e-19 99.8 65 72.3
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 4.6e-18 96.7 61 78.7
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 5.6e-16 89.7 66 68.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 5.8e-13 79.7 53 67.9
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.9e-11 74.7 57 64.9
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 3.9e-09 67.0 37 86.5
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 6.9e-06 56.2 291 25.8


User provided reference genes

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