Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-176 623.2 317 100.0
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 4.0e-139 498.4 294 87.1
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.2e-138 496.9 294 86.7
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 7.8e-103 377.9 294 64.3
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 3.4e-98 362.5 293 63.8
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 4.4e-98 362.1 291 63.6
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 7.6e-98 361.3 293 63.5
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 7.6e-98 361.3 293 63.5
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.7e-97 360.1 287 61.7
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 3.8e-97 359.0 295 61.0
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 8.4e-97 357.8 299 58.2
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 8.4e-97 357.8 287 63.1
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 8.4e-97 357.8 295 61.7
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.4e-96 357.1 290 61.7
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.4e-96 357.1 287 61.7
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 2.4e-96 356.3 290 61.0
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 4.2e-96 355.5 287 61.0
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 4.2e-96 355.5 293 61.1
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 7.8e-95 351.3 298 61.1
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 1.3e-94 350.5 295 61.0
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 2.3e-94 349.7 287 61.7
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 3.9e-94 349.0 284 59.5
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 8.7e-94 347.8 292 60.6
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.1e-93 347.4 284 62.7
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.5e-93 347.1 288 61.5
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 2.5e-93 346.3 294 59.9
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 4.3e-93 345.5 292 58.9
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 7.3e-93 344.7 288 61.1
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 9.6e-93 344.4 294 58.5
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 2.8e-92 342.8 295 59.7
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.1e-91 340.9 293 60.4
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 4.0e-91 339.0 295 56.9
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 4.0e-91 339.0 288 59.7
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 5.3e-91 338.6 291 59.1
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 6.9e-91 338.2 292 59.6
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 9.0e-91 337.8 292 59.2
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 9.0e-91 337.8 292 58.9
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 9.0e-91 337.8 294 61.6
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 2.6e-90 336.3 293 60.1
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 3.4e-90 335.9 289 57.1
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 5.8e-90 335.1 292 57.5
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 7.6e-90 334.7 289 57.1
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 7.6e-90 334.7 292 59.6
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 9.9e-90 334.3 289 57.4
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 1.3e-89 334.0 289 56.7
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 3.8e-89 332.4 289 56.7
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 4.9e-89 332.0 290 56.9
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 6.4e-89 331.6 290 57.2
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 8.4e-89 331.3 295 58.3
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 8.4e-89 331.3 287 57.8
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 1.1e-88 330.9 290 56.9
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 1.1e-88 330.9 292 56.5
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.4e-88 330.5 294 57.8
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.4e-88 330.5 289 56.7
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 3.2e-88 329.3 292 56.2
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 3.2e-88 329.3 290 57.6
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 4.2e-88 328.9 287 58.9
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 4.2e-88 328.9 298 57.7
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 4.2e-88 328.9 293 57.3
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 7.1e-88 328.2 297 56.2
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 7.1e-88 328.2 287 57.1
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 9.3e-88 327.8 286 58.4
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.6e-87 327.0 287 58.5
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.6e-87 327.0 287 57.8
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.1e-87 326.6 287 58.9
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 3.5e-87 325.9 293 53.9
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 4.6e-87 325.5 291 58.1
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 6.0e-87 325.1 289 55.7
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 6.0e-87 325.1 289 56.4
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 6.0e-87 325.1 287 58.5
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.8e-86 323.6 334 51.8
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 1.8e-86 323.6 291 55.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 2.3e-86 323.2 289 56.7
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 2.3e-86 323.2 291 55.0
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 6.7e-86 321.6 290 58.6
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 6.7e-86 321.6 287 55.7
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 1.1e-85 320.9 291 58.4
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 4.3e-85 318.9 288 55.6
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 1.1e-83 314.3 321 51.7
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 4.0e-83 312.4 290 57.6
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 9.0e-83 311.2 291 54.3
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 2.0e-82 310.1 288 56.6
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 2.6e-82 309.7 290 56.6
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 9.9e-82 307.8 288 55.9
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 6.4e-81 305.1 288 55.6
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 6.4e-81 305.1 288 55.2
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-80 303.9 288 55.2
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 3.2e-80 302.8 291 53.3
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.5e-80 302.0 288 54.9
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 3.5e-79 299.3 285 52.6
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-78 297.4 288 54.5
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-78 297.4 288 54.2
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 2.3e-78 296.6 289 52.2
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 3.0e-78 296.2 285 54.7
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 5.1e-78 295.4 326 49.1
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 2.8e-76 289.7 297 49.5
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 1.1e-75 287.7 254 56.3
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 1.4e-75 287.3 286 51.7
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.8e-75 287.0 286 54.2
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 4.5e-74 282.3 260 54.2
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.3e-73 280.8 283 51.6
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 4.9e-73 278.9 291 51.2
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 2.5e-72 276.6 389 42.4
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 2.5e-72 276.6 308 50.6
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 4.2e-72 275.8 289 50.2
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 4.6e-71 272.3 294 51.0
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 2.4e-67 260.0 290 47.9
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 1.5e-66 257.3 215 61.4
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 7.9e-63 245.0 298 47.0
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 4.1e-51 206.1 179 54.7
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-48 197.6 208 52.9
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.9e-46 189.5 130 70.8
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.9e-46 189.5 130 70.8
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 1.6e-42 177.6 297 35.0
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 1.3e-41 174.5 296 32.1
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 3.2e-40 169.9 203 49.3
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 3.2e-40 169.9 305 35.4
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 5.7e-37 159.1 189 49.2
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 8.2e-36 155.2 162 56.8
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.0e-34 150.6 264 33.7
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 3.2e-32 143.3 181 48.1
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.7e-29 132.5 211 41.7
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 9.8e-21 105.1 132 47.0
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.3e-20 104.8 81 59.3
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.8e-13 78.6 60 61.7
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.8e-13 78.6 60 61.7
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.8e-13 78.6 60 61.7
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-12 77.8 109 45.0
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 8.3e-12 75.5 60 60.0
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.2e-10 71.6 74 47.3
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.2e-10 71.6 74 47.3
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 2.5e-08 63.9 71 42.3
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 1.2e-07 61.6 82 42.7
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.8e-07 60.5 82 42.7
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 4.7e-07 59.7 82 41.5
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 1.4e-06 58.2 69 40.6


User provided reference genes

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