Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 5.6e-102 374.4 204 100.0
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 2.2e-50 203.0 205 63.9
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.4e-49 200.3 203 64.5
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 2.5e-49 199.5 205 64.4
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 5.5e-49 198.4 204 62.7
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 2.1e-48 196.4 206 63.6
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 3.5e-48 195.7 205 63.4
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 3.5e-48 195.7 204 63.2
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.0e-47 194.1 204 61.8
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 3.0e-47 192.6 211 61.6
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.9e-47 192.2 204 61.8
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 1.1e-46 190.7 208 60.1
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.5e-46 189.5 206 62.1
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 5.7e-46 188.3 205 62.0
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 5.7e-46 188.3 205 61.5
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 7.4e-46 188.0 166 70.5
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.3e-45 187.2 189 64.0
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 2.8e-45 186.0 204 61.8
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.7e-45 185.7 155 69.7
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.3e-45 184.9 156 70.5
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.1e-44 184.1 154 72.7
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.1e-44 184.1 156 72.4
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 1.4e-44 183.7 191 63.9
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.4e-44 183.7 154 72.1
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 2.4e-44 183.0 154 71.4
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 3.1e-44 182.6 202 60.9
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 6.9e-44 181.4 142 74.6
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 6.9e-44 181.4 154 70.8
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.2e-43 180.6 169 66.3
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.5e-43 180.3 202 59.4
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 2.0e-43 179.9 240 53.3
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 2.0e-43 179.9 196 60.7
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 2.0e-43 179.9 206 59.7
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 3.4e-43 179.1 153 70.6
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 4.5e-43 178.7 154 72.1
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 5.9e-43 178.3 202 58.9
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 5.9e-43 178.3 187 63.1
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.0e-42 177.6 168 69.0
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.0e-42 177.6 202 57.9
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 1.7e-42 176.8 177 63.3
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 6.5e-42 174.9 206 58.7
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 2.5e-41 172.9 187 60.4
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 3.2e-41 172.6 154 66.9
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 4.2e-41 172.2 151 66.9
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 7.2e-41 171.4 201 58.2
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 9.3e-41 171.0 183 63.4
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 1.2e-40 170.6 141 69.5
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.1e-40 169.9 204 54.9
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.7e-40 169.5 197 58.9
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 3.6e-40 169.1 178 59.6
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 3.6e-40 169.1 159 67.3
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 4.6e-40 168.7 130 75.4
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 4.6e-40 168.7 121 79.3
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 4.6e-40 168.7 196 58.2
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.1e-40 168.3 154 66.2
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 6.1e-40 168.3 154 66.2
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.8e-39 166.8 165 61.8
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 2.3e-39 166.4 158 67.7
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.1e-38 164.1 201 56.7
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 1.1e-38 164.1 179 59.8
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.3e-38 162.5 124 72.6
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 3.3e-38 162.5 171 59.6
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 4.3e-38 162.2 163 63.8
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 7.4e-38 161.4 123 75.6
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 7.4e-38 161.4 158 63.3
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.3e-37 160.6 230 51.3
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 1.3e-37 160.6 166 62.0
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.6e-37 160.2 150 64.7
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 3.7e-37 159.1 151 64.2
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 3.7e-37 159.1 151 64.2
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 3.7e-37 159.1 151 64.2
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 6.3e-37 158.3 141 65.2
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 8.2e-37 157.9 123 73.2
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.1e-36 157.5 150 63.3
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.4e-36 157.1 151 62.9
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 2.4e-36 156.4 184 58.7
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 3.1e-36 156.0 127 70.9
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 4.1e-36 155.6 151 63.6
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 4.1e-36 155.6 153 63.4
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 1.2e-35 154.1 125 71.2
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 2.0e-35 153.3 125 71.2
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 2.6e-35 152.9 120 70.0
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 3.4e-35 152.5 204 52.0
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.7e-34 150.2 213 51.2
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 2.2e-34 149.8 197 52.8
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.1e-33 147.5 139 64.0
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 2.5e-33 146.4 100 77.0
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 7.2e-33 144.8 205 51.2
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 4.6e-32 142.1 99 77.8
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 7.9e-32 141.4 151 58.3
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 2.3e-31 139.8 88 83.0
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.0e-31 139.4 139 65.5
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 3.9e-31 139.0 157 57.3
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 5.1e-31 138.7 192 53.1
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 2.0e-30 136.7 157 56.7
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 8.2e-29 131.3 138 57.2
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.1e-28 131.0 166 51.8
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 2.4e-28 129.8 172 50.0
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 1.5e-27 127.1 126 59.5
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 4.5e-27 125.6 164 53.0
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.9e-25 120.2 124 60.5
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 5.5e-25 118.6 125 56.0
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 2.1e-24 116.7 169 46.7
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.7e-23 111.7 84 73.8
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.8e-21 106.3 157 49.0
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.2e-21 104.8 82 73.2
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.2e-21 104.8 82 73.2
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.2e-18 96.7 115 58.3
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 4.2e-17 92.4 147 42.9
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 8.0e-16 88.2 153 43.1
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 9.7e-14 81.3 92 54.3
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 8.2e-13 78.2 164 36.6
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 3.1e-12 76.3 91 51.6
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 9.1e-12 74.7 81 54.3


User provided reference genes

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