Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02009 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.4e-66 256.1 131 100.0
Eucgr.A01996 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.4e-58 228.8 131 90.8
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 5.6e-47 191.0 150 70.0
Eucgr.A01998 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.6e-28 129.0 74 89.2
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 1.3e-24 116.7 130 49.2
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 2.8e-22 109.0 154 43.5
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 4.5e-20 101.7 140 41.4
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 5.8e-20 101.3 154 40.9
Eucgr.A02000 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.9e-19 99.0 68 79.4
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 3.8e-19 98.6 134 41.8
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 4.9e-19 98.2 134 43.3
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 4.9e-19 98.2 149 38.3
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 8.4e-19 97.4 138 42.8
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 1.4e-18 96.7 149 38.9
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 1.9e-18 96.3 143 39.2
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 3.2e-18 95.5 143 40.6
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 3.2e-18 95.5 145 39.3
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 9.3e-18 94.0 140 40.7
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 1.2e-17 93.6 149 36.2
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 1.6e-17 93.2 128 41.4
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 1.6e-17 93.2 144 39.6
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 2.1e-17 92.8 149 37.6
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 6.0e-17 91.3 140 38.6
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 6.0e-17 91.3 154 38.3
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 1.0e-16 90.5 150 38.0
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 1.8e-16 89.7 154 36.4
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 3.9e-16 88.6 154 34.4
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 6.7e-16 87.8 144 38.9
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 6.7e-16 87.8 153 36.6
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 8.7e-16 87.4 144 37.5
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 1.1e-15 87.0 144 38.2
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 2.5e-15 85.9 141 38.3
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 5.7e-15 84.7 148 37.2
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 5.7e-15 84.7 148 37.2
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 7.4e-15 84.3 150 37.3
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 2.1e-14 82.8 152 36.8
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 2.1e-14 82.8 148 35.8
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.1e-14 82.8 148 35.8
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 2.1e-14 82.8 145 35.2
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 4.8e-14 81.6 143 36.4
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 4.8e-14 81.6 146 35.6
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 1.1e-13 80.5 151 38.4
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 1.2e-12 77.0 145 35.2
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 2.6e-12 75.9 128 38.3
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 4.5e-12 75.1 107 41.1
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 4.5e-12 75.1 115 38.3
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 7.6e-12 74.3 149 36.9
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 1.0e-11 73.9 125 37.6
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 1.3e-11 73.6 146 35.6
Solyc12g011190.2 Solanum lycopersicum HOM05D007704 ORTHO05D009758 1.3e-11 73.6 144 33.3
Nitab4.5_0001232g0110 Nicotiana tabacum HOM05D007704 ORTHO05D009758 1.7e-11 73.2 146 32.9
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 2.2e-11 72.8 143 32.2
Lj6g0009873 Lotus japonicus HOM05D007704 ORTHO05D009758 2.9e-11 72.4 187 29.4
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 3.8e-11 72.0 127 36.2
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 3.8e-11 72.0 127 36.2
CAN.G164.20 Capsicum annuum HOM05D007704 ORTHO05D009758 3.8e-11 72.0 132 34.8
Sopen12g006550 Solanum pennellii HOM05D007704 ORTHO05D009758 3.8e-11 72.0 144 32.6
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 6.5e-11 71.2 149 34.9
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 8.4e-11 70.9 115 34.8
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 8.4e-11 70.9 106 38.7
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 8.4e-11 70.9 142 33.8
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 1.1e-10 70.5 118 37.3
Aa31LG1G7580 Aethionema arabicum HOM05D007704 ORTHO05D009758 1.9e-10 69.7 109 41.3
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 7.2e-10 67.8 115 34.8
AUR62000092 Chenopodium quinoa HOM05D007704 ORTHO05D009758 7.2e-10 67.8 149 34.9
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 9.3e-10 67.4 154 32.5
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 1.2e-09 67.0 104 37.5
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 1.6e-09 66.6 127 34.6
EL10Ac4g10303 Beta vulgaris HOM05D007704 ORTHO05D009758 1.6e-09 66.6 153 31.4
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 3.5e-09 65.5 143 30.1
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 3.5e-09 65.5 104 38.5
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 3.5e-09 65.5 150 33.3
ClCG09G022520 Citrullus lanatus HOM05D007704 ORTHO05D009758 1.9e-07 59.7 127 33.9
Ah.06g193590 Amaranthus hybridus HOM05D003002 ORTHO05D003583 4.3e-07 58.5 150 30.0
Mapoly0023s0099 Marchantia polymorpha HOM05D007704 ORTHO05D009758 4.3e-07 58.5 119 33.6
FAN05G1345 Fragaria x ananassa HOM05D007704 ORTHO05D009758 1.3e-06 57.0 103 35.9


User provided reference genes

Program Settings