Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01996 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.3e-67 259.6 131 100.0
Eucgr.A02009 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.9e-59 231.9 131 90.8
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.1e-49 199.1 150 71.3
Eucgr.A01998 Eucalyptus grandis HOM05D007704 ORTHO05D009758 6.2e-30 134.4 74 91.9
Eucgr.A02000 Eucalyptus grandis HOM05D007704 ORTHO05D009758 3.3e-23 112.1 68 86.8
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 4.3e-23 111.7 126 49.2
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 7.4e-23 110.9 154 44.2
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 6.9e-21 104.4 154 42.2
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 1.2e-20 103.6 134 44.0
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 1.5e-20 103.2 134 45.5
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 1.0e-19 100.5 149 40.9
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 1.0e-19 100.5 140 40.7
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 1.1e-18 97.1 149 38.3
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 2.5e-18 95.9 142 40.8
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 4.2e-18 95.1 143 41.3
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 4.2e-18 95.1 128 42.2
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 5.5e-18 94.7 145 39.3
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 9.3e-18 94.0 149 36.9
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 9.3e-18 94.0 154 36.4
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 1.2e-17 93.6 140 38.6
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 1.6e-17 93.2 137 40.9
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 2.1e-17 92.8 144 40.3
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 4.6e-17 91.7 140 40.0
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 4.6e-17 91.7 149 37.6
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 7.9e-17 90.9 154 35.7
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 1.3e-16 90.1 150 38.0
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 1.3e-16 90.1 154 38.3
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 6.7e-16 87.8 144 39.6
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 4.3e-15 85.1 144 38.2
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 4.3e-15 85.1 144 38.9
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 4.3e-15 85.1 141 38.3
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 7.4e-15 84.3 152 38.2
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 7.4e-15 84.3 153 36.6
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.8e-14 82.4 150 36.7
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 3.7e-14 82.0 148 34.5
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 3.7e-14 82.0 145 35.2
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 6.3e-14 81.3 148 36.5
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 6.3e-14 81.3 148 36.5
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 6.3e-14 81.3 146 35.6
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 1.1e-13 80.5 148 35.8
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 6.9e-13 77.8 124 40.3
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 9.0e-13 77.4 128 38.3
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 1.2e-12 77.0 146 38.4
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 1.5e-12 76.6 146 34.9
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 3.4e-12 75.5 144 31.2
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 4.5e-12 75.1 127 37.8
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 4.5e-12 75.1 127 37.8
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 4.5e-12 75.1 133 36.1
Lj6g0009873 Lotus japonicus HOM05D007704 ORTHO05D009758 5.9e-12 74.7 192 30.2
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 5.9e-12 74.7 132 38.6
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 7.6e-12 74.3 120 38.3
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 1.3e-11 73.6 124 35.5
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 1.3e-11 73.6 149 34.9
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 1.7e-11 73.2 115 34.8
Solyc12g011190.2 Solanum lycopersicum HOM05D007704 ORTHO05D009758 1.7e-11 73.2 144 31.2
Aa31LG1G7580 Aethionema arabicum HOM05D007704 ORTHO05D009758 2.2e-11 72.8 109 40.4
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 3.8e-11 72.0 118 35.6
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 3.8e-11 72.0 143 32.2
Sopen12g006550 Solanum pennellii HOM05D007704 ORTHO05D009758 5.0e-11 71.6 144 30.6
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 6.5e-11 71.2 121 33.9
Nitab4.5_0001232g0110 Nicotiana tabacum HOM05D007704 ORTHO05D009758 6.5e-11 71.2 146 32.9
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 6.5e-11 71.2 113 38.1
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 8.4e-11 70.9 127 35.4
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 1.1e-10 70.5 131 35.1
CAN.G164.20 Capsicum annuum HOM05D007704 ORTHO05D009758 1.1e-10 70.5 132 34.1
AUR62000092 Chenopodium quinoa HOM05D007704 ORTHO05D009758 1.4e-10 70.1 149 35.6
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 1.9e-10 69.7 129 34.9
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 1.9e-10 69.7 125 37.6
EL10Ac4g10303 Beta vulgaris HOM05D007704 ORTHO05D009758 1.9e-10 69.7 165 30.9
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 1.9e-10 69.7 104 37.5
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 2.5e-10 69.3 104 36.5
Ah.06g193590 Amaranthus hybridus HOM05D003002 ORTHO05D003583 1.2e-09 67.0 150 31.3
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 6.1e-09 64.7 143 30.8
ClCG09G022520 Citrullus lanatus HOM05D007704 ORTHO05D009758 1.8e-08 63.2 112 35.7
Mapoly0023s0099 Marchantia polymorpha HOM05D007704 ORTHO05D009758 1.1e-07 60.5 149 33.6
Os01g0246500 Oryza sativa ssp. japonica HOM05D007704 ORTHO05D009758 2.5e-07 59.3 161 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3472 Anthoceros agrestis HOM05D007704 ORTHO05D009758 7.4e-07 57.8 120 36.7
Migut.M00569 Erythranthe guttata HOM05D007704 ORTHO05D009758 2.2e-06 56.2 153 30.1
Cc05_g09660 Coffea canephora HOM05D007704 ORTHO05D009758 3.7e-06 55.5 121 30.6


User provided reference genes

Program Settings