Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.6e-136 487.3 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.8e-129 466.1 262 94.7
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.6e-128 462.2 262 93.9
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 7.6e-128 460.7 262 93.1
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 93.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 91.6
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.9e-126 456.1 262 92.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.6e-125 453.0 262 91.2
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 91.6
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 91.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 90.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 6.0e-125 451.1 262 90.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 90.8
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.0e-124 450.3 262 91.2
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 90.8
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 90.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 89.3
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 91.2
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.0e-124 448.7 262 90.8
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.0e-124 448.7 262 90.1
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.1e-124 448.0 262 90.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 89.7
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 88.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 7.3e-123 444.1 262 90.5
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 88.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 89.3
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 89.7
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.8
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 87.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.4e-121 439.1 262 87.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.0
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 86.6
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 5.3e-121 438.0 261 87.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 88.9
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 86.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.8
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 85.9
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 86.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 86.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 87.4
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 88.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 87.0
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.2e-119 432.6 259 88.8
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 6.4e-119 431.0 263 87.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 87.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 87.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 84.7
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.1
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.5
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-118 429.5 263 87.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 87.8
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.9
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 84.4
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.5
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.9
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-117 426.4 263 86.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.9
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.9
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 3.0e-116 422.2 262 87.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.0e-116 422.2 263 85.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.7
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 83.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 83.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 83.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 84.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 82.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 8.1e-114 414.1 250 85.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-113 413.7 264 83.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 83.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.0e-113 411.8 247 88.7
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 4.0e-113 411.8 264 83.3
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 9.0e-113 410.6 264 83.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.0e-112 409.5 247 87.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 2.6e-112 409.1 262 81.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.4e-112 408.7 260 84.6
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 82.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-111 406.4 263 82.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 82.1
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.9e-111 405.6 263 83.7
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.5e-110 402.5 262 81.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.2e-110 401.7 255 85.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 84.4
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 7.1e-110 401.0 263 83.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 80.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 80.2
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.8
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.8
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.8
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 79.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 79.8
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 80.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 82.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.1e-107 393.7 270 78.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.4
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 79.4
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 79.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 79.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 82.9
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 78.2
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 82.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.0e-105 385.2 270 77.4
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.8e-103 378.6 248 82.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.4e-103 377.5 262 78.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.1e-102 374.4 263 79.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.6e-101 373.2 264 79.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.7e-101 372.5 262 77.9
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.3e-98 363.6 249 75.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-97 360.5 218 87.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 4.5e-96 355.1 241 81.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 8.5e-95 350.9 262 74.0
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.4e-94 350.1 210 87.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-94 350.1 234 77.8
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.6e-93 346.7 226 78.8
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.7e-93 345.9 263 68.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.3e-92 342.8 214 85.5
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.8e-90 335.9 263 67.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.8e-90 335.9 223 76.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 4.5e-88 328.6 219 77.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.6e-83 312.8 247 70.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.8e-81 306.6 250 70.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.4e-81 306.2 267 63.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.5e-79 297.7 236 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.4e-78 297.0 240 64.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.8e-76 290.0 204 78.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.6e-75 286.2 250 64.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.6e-72 276.9 263 62.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.0e-72 276.6 208 69.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.5e-71 271.2 262 63.7
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.6e-69 265.8 270 57.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.7e-64 249.6 211 63.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-63 247.3 236 64.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.6e-56 223.8 130 88.5
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 4.5e-56 222.2 244 52.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.0e-52 211.1 120 90.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 7.5e-51 204.9 245 49.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-50 204.1 138 80.4
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.0e-47 192.2 118 86.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.8e-45 186.4 179 59.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.7e-37 159.1 141 67.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.4e-36 157.5 191 51.3
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 9.5e-30 134.8 96 69.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.6e-24 117.5 69 88.4


User provided reference genes

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