Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 0.0e+00 1272.7 860 100.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.0e-160 571.6 759 51.4
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 8.7e-152 542.0 747 47.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 9.6e-151 538.5 746 48.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 9.3e-146 521.9 795 49.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.2e-145 521.5 746 49.5
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.3e-144 518.1 737 45.9
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 6.7e-144 515.8 755 48.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 8.7e-144 515.4 818 46.2
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.4e-141 508.1 793 48.2
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.1e-141 506.9 716 45.3
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.2e-140 505.0 727 45.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.8e-140 502.7 727 44.8
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 9.7e-135 485.3 768 42.8
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.2e-132 478.4 745 48.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.5e-132 478.0 754 47.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.0e-132 477.6 767 45.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.0e-132 477.6 711 41.1
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.9e-131 473.8 744 43.5
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 6.5e-131 472.6 778 44.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.4e-130 471.5 761 46.3
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.5e-130 470.7 773 46.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.2e-130 469.9 761 44.2
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 5.5e-130 469.5 785 45.1
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 4.6e-129 466.5 800 44.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.3e-128 464.2 756 38.1
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.9e-128 463.4 767 44.5
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 5.1e-128 463.0 757 43.7
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.8e-126 457.2 737 45.3
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 4.1e-125 453.4 790 46.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 9.1e-125 452.2 762 44.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.5e-124 451.4 779 42.7
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.4e-124 450.3 794 41.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 4.5e-124 449.9 762 42.1
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.9e-123 447.2 753 40.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.5e-122 444.1 688 43.8
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 4.2e-122 443.4 745 41.7
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.1e-121 441.0 759 43.6
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.7e-121 440.7 742 37.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 7.9e-121 439.1 750 43.1
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.0e-116 424.5 753 40.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.4e-116 423.7 739 38.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 7.7e-116 422.5 758 39.2
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-115 421.8 766 40.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.8e-115 420.2 741 35.9
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.2e-114 417.2 820 41.6
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.6e-113 413.7 766 46.1
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.4e-112 411.8 760 39.7
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 5.2e-112 409.8 738 36.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 4.4e-111 406.8 766 44.0
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.4e-111 406.0 763 37.1
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.7e-110 404.8 746 36.7
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.7e-110 404.8 761 44.8
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.1e-109 399.1 748 37.0
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 9.1e-109 399.1 769 37.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 9.1e-109 399.1 769 39.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-108 398.3 799 42.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.9e-107 394.0 748 40.1
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 8.5e-107 392.5 757 34.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.9e-106 391.3 727 36.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 7.2e-106 389.4 753 40.1
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 2.1e-105 387.9 764 38.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.6e-105 387.1 752 37.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 6.1e-105 386.3 767 39.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.4e-104 385.2 761 39.0
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.8e-104 384.8 761 39.0
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.3e-104 384.4 771 44.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 3.0e-104 384.0 766 39.4
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.7e-104 382.9 768 37.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.7e-102 378.3 741 37.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.2e-102 377.9 760 35.5
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.1e-101 374.0 780 44.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-99 368.6 748 38.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.8e-99 367.1 742 38.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 3.8e-99 367.1 746 41.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.5e-98 365.2 728 40.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.6e-97 360.5 727 41.7
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 5.7e-95 353.2 735 33.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.7e-94 351.7 759 39.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.7e-94 350.5 727 34.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 4.8e-94 350.1 744 32.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 8.3e-94 349.4 756 36.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.1e-93 349.0 713 37.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.8e-93 348.2 722 33.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.0e-93 346.3 769 36.9
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.6e-92 345.1 728 36.4
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.6e-92 345.1 756 35.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 4.2e-90 337.0 840 41.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.6e-89 335.1 730 33.7
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 6.8e-88 329.7 837 34.3
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 8.9e-88 329.3 757 37.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 5.7e-87 326.6 747 40.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 9.8e-87 325.9 774 35.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.5e-84 317.4 670 33.4
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 5.9e-84 316.6 752 33.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 7.8e-84 316.2 781 35.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.5e-82 312.0 591 41.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 4.3e-82 310.5 712 35.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 3.6e-81 307.4 771 32.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-80 304.7 766 32.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 7.5e-79 299.7 752 34.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.7e-78 297.4 741 31.0
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-77 295.0 745 31.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 4.1e-77 293.9 716 33.9
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.5e-76 290.8 843 30.5
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.3e-75 288.1 769 36.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.3e-74 284.3 878 30.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.2e-71 275.8 295 52.5
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.6e-66 256.9 284 49.3
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.2e-65 255.8 723 32.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.1e-65 255.0 872 31.5
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.1e-64 252.7 589 35.0
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 2.0e-63 248.4 277 59.2
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 6.4e-62 243.4 783 30.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 5.4e-61 240.4 753 27.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.6e-60 238.8 375 44.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 8.6e-59 233.0 742 27.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.5e-58 232.3 760 29.3
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.1e-49 201.8 272 43.8
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.8e-49 201.4 172 54.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.0e-40 171.0 375 41.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 8.4e-38 163.3 727 23.2
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.4e-37 162.5 142 52.8
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.3e-35 155.2 228 40.4
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.3e-33 149.4 426 33.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.1e-32 146.4 322 35.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.5e-31 142.5 798 29.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.9e-30 138.3 307 36.2
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.2e-29 134.4 172 41.9
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.7e-28 131.7 155 49.7
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.2e-23 116.3 146 47.3
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 7.6e-23 113.6 138 47.1
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 5.5e-21 107.5 211 34.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 9.3e-21 106.7 220 34.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.3e-18 97.8 217 33.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.6e-15 88.6 121 40.5
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.5e-13 82.0 74 58.1
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.7e-09 69.3 63 52.4


User provided reference genes

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