Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.8e-74 282.0 153 100.0
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 8.0e-45 184.1 164 64.6
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 2.9e-39 165.6 152 63.8
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 2.9e-39 165.6 168 58.9
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 5.0e-39 164.9 172 58.1
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 6.6e-39 164.5 167 58.1
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 8.6e-39 164.1 172 56.4
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 8.6e-39 164.1 166 57.8
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-38 163.3 172 58.1
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-38 163.3 172 58.1
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.9e-38 162.9 165 58.2
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 1.9e-38 162.9 165 57.6
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.5e-38 162.5 146 63.7
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 2.5e-38 162.5 166 57.2
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-38 162.2 170 55.3
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-38 162.2 170 55.3
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 4.3e-38 161.8 166 58.4
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 4.3e-38 161.8 172 57.6
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 5.6e-38 161.4 172 57.6
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 5.6e-38 161.4 172 57.6
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 9.5e-38 160.6 146 65.8
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 9.5e-38 160.6 168 56.0
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 9.5e-38 160.6 170 57.6
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.8e-37 159.1 144 63.9
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 4.7e-37 158.3 168 54.8
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 4.7e-37 158.3 161 59.0
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 6.1e-37 157.9 144 63.2
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.4e-36 156.8 144 63.2
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 1.8e-36 156.4 166 56.6
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.8e-36 156.4 149 61.7
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 3.0e-36 155.6 149 60.4
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 4.0e-36 155.2 161 58.4
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 4.0e-36 155.2 147 61.9
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 4.0e-36 155.2 175 52.0
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 5.2e-36 154.8 166 57.2
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 8.9e-36 154.1 167 56.9
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 8.9e-36 154.1 149 58.4
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 8.9e-36 154.1 160 58.1
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.2e-35 153.7 148 57.4
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 2.0e-35 152.9 166 57.8
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.6e-35 152.5 142 62.7
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 3.4e-35 152.1 169 55.6
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 4.4e-35 151.8 152 59.2
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.3e-34 150.2 144 60.4
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.3e-34 150.2 144 60.4
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.3e-34 150.2 146 59.6
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.2e-34 149.4 172 51.7
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.9e-34 149.1 163 54.0
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 3.7e-34 148.7 144 59.7
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 6.4e-34 147.9 168 52.4
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 6.4e-34 147.9 168 52.4
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.1e-33 147.1 166 56.6
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.8e-33 146.4 143 58.0
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 3.2e-33 145.6 155 56.8
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.4e-33 144.8 163 54.0
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 7.0e-33 144.4 140 57.9
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 9.2e-33 144.1 159 55.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.2e-32 143.7 145 54.5
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.6e-32 143.3 144 59.0
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.6e-32 143.3 171 50.9
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 3.5e-32 142.1 152 55.9
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 3.5e-32 142.1 147 53.1
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 7.8e-32 141.0 158 52.5
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.7e-31 139.8 168 48.2
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 3.0e-31 139.0 144 56.2
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 3.0e-31 139.0 153 54.2
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.0e-31 138.3 143 53.8
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 8.6e-31 137.5 157 53.5
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 1.1e-30 137.1 162 49.4
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 1.5e-30 136.7 148 51.4
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 1.5e-30 136.7 165 50.3
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.9e-30 136.3 145 55.2
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 2.5e-30 136.0 144 56.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 3.3e-30 135.6 169 48.5
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.3e-30 135.6 158 50.6
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 4.3e-30 135.2 163 51.5
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 7.3e-30 134.4 147 51.7
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 7.3e-30 134.4 148 52.7
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 7.3e-30 134.4 164 50.0
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 9.5e-30 134.0 140 54.3
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.2e-29 133.7 170 48.2
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.6e-29 133.3 165 50.9
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.6e-29 133.3 157 49.7
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.6e-29 133.3 164 49.4
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 2.8e-29 132.5 150 52.0
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.7e-29 131.7 148 51.4
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.7e-29 131.7 148 51.4
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.7e-29 131.7 152 50.0
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 4.7e-29 131.7 107 71.0
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 8.0e-29 131.0 149 51.7
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 8.0e-29 131.0 149 51.7
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 8.0e-29 131.0 149 51.7
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 8.0e-29 131.0 149 51.7
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 8.0e-29 131.0 149 51.7
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.0e-28 130.6 150 50.0
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.0e-28 130.6 148 51.4
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.0e-28 130.6 148 51.4
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.4e-28 130.2 157 50.3
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 1.4e-28 130.2 97 74.2
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-28 129.8 158 49.4
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-28 129.8 158 49.4
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.1e-28 129.0 161 47.2
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 3.1e-28 129.0 144 50.7
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 6.8e-28 127.9 136 53.7
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 6.8e-28 127.9 136 54.4
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 6.8e-28 127.9 136 53.7
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 1.2e-27 127.1 136 53.7
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 1.2e-27 127.1 136 53.7
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.2e-27 127.1 130 57.7
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.2e-27 127.1 145 52.4
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.6e-27 125.9 142 52.1
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 2.6e-27 125.9 142 53.5
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 7.5e-27 124.4 157 49.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 7.5e-27 124.4 103 67.0
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.8e-27 124.0 157 48.4
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.3e-26 123.6 138 60.1
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.3e-26 123.6 157 48.4
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.7e-26 123.2 140 53.6
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.2e-26 122.9 157 48.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.7e-26 122.1 103 67.0
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 3.7e-26 122.1 139 54.0
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 4.9e-26 121.7 140 52.9
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 1.1e-25 120.6 137 52.6
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 1.1e-25 120.6 137 52.6
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.1e-25 120.6 128 55.5
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.1e-25 120.6 137 52.6
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.4e-25 120.2 157 47.1
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.4e-25 120.2 138 53.6
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.4e-25 119.4 139 50.4
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 2.4e-25 119.4 144 49.3
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.2e-25 119.0 157 49.0
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 3.2e-25 119.0 136 52.9
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.6e-24 116.7 152 48.0
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 6.0e-24 114.8 140 50.7
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.9e-23 112.1 124 54.8
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 1.1e-22 110.5 144 43.8
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 2.5e-22 109.4 141 48.9
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.3e-22 109.0 123 54.5
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 7.3e-22 107.8 143 48.3
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.1e-20 104.0 153 45.8
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 2.3e-20 102.8 108 56.5
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.1e-20 102.4 115 54.8
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 3.1e-20 102.4 102 56.9
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.0e-19 99.8 142 48.6
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.6e-19 99.4 92 62.0
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 2.6e-19 99.4 158 43.0
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 7.5e-19 97.8 136 45.6
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 7.5e-19 97.8 136 45.6
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 9.8e-19 97.4 158 42.4
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 1.3e-18 97.1 131 50.4
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.1e-17 94.0 107 53.3
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 4.1e-17 92.0 110 52.7
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.7e-16 89.4 137 45.3
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.0e-15 85.9 130 44.6
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-14 84.0 138 41.3
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.6e-14 81.6 161 39.8
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 1.6e-13 80.1 130 44.6
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.1e-12 77.4 72 59.7
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 2.3e-12 76.3 115 41.7
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 4.0e-12 75.5 72 59.7
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 1.5e-11 73.6 111 42.3
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-08 63.5 50 60.0
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 2.1e-08 63.2 57 56.1
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.7e-08 62.8 116 41.4
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 4.6e-08 62.0 95 42.1
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 6.0e-08 61.6 119 36.1
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.0e-08 61.6 127 39.4
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 3.9e-07 58.9 92 45.7
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 1.5e-06 57.0 111 40.5
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 3.3e-06 55.8 86 50.0
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 4.3e-06 55.5 112 33.9
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 4.3e-06 55.5 101 39.6
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 7.3e-06 54.7 77 51.9
MELO3C013623.2 Cucumis melo HOM05D003772 ORTHO05D004509 7.3e-06 54.7 61 57.4
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 7.3e-06 54.7 113 36.3
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 7.3e-06 54.7 88 45.5
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 7.3e-06 54.7 126 38.1
Nn2g11947 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.6e-06 54.3 58 60.3


User provided reference genes

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