Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.1e-45 185.3 89 100.0
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.3e-44 181.8 88 98.9
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 1.7e-31 139.0 87 75.9
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.5e-30 136.0 87 74.7
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 5.5e-30 134.0 87 71.3
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.2e-29 132.9 87 72.4
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.2e-29 132.9 88 70.5
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.7e-29 131.7 88 71.6
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 6.1e-29 130.6 88 65.9
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 8.0e-29 130.2 90 70.0
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.0e-28 129.8 88 65.9
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 4.0e-28 127.9 88 68.2
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 5.2e-28 127.5 87 71.3
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 5.2e-28 127.5 87 69.0
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 3.3e-27 124.8 88 64.8
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-27 124.8 88 64.8
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-27 124.8 88 64.8
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-27 124.8 88 64.8
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 5.7e-27 124.0 88 67.0
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 7.5e-27 123.6 87 65.5
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 1.7e-26 122.5 88 62.5
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 2.2e-26 122.1 88 64.8
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 2.8e-26 121.7 88 64.8
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 3.7e-26 121.3 87 67.8
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 3.7e-26 121.3 87 64.4
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 3.7e-26 121.3 87 64.4
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 3.7e-26 121.3 87 64.4
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 6.3e-26 120.6 87 64.4
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.4e-25 119.4 88 67.0
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.8e-25 119.0 87 65.5
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.4e-25 118.6 87 62.1
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 5.3e-25 117.5 87 62.1
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 7.0e-25 117.1 88 61.4
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 9.1e-25 116.7 88 61.4
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 1.2e-24 116.3 86 59.3
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.6e-24 115.9 87 59.8
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.6e-24 115.9 88 60.2
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 2.7e-24 115.2 87 59.8
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.5e-24 114.4 88 62.5
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 4.5e-24 114.4 88 62.5
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 4.5e-24 114.4 87 65.5
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 5.9e-24 114.0 86 62.8
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 5.9e-24 114.0 87 62.1
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 5.9e-24 114.0 88 61.4
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 5.9e-24 114.0 86 59.3
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 5.9e-24 114.0 87 60.9
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 2.2e-23 112.1 88 59.1
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 2.9e-23 111.7 87 63.2
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 2.9e-23 111.7 88 59.1
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.9e-23 111.7 88 58.0
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.8e-23 111.3 81 61.7
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 3.8e-23 111.3 88 60.2
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 3.8e-23 111.3 88 61.4
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 5.0e-23 110.9 86 58.1
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 5.0e-23 110.9 88 61.4
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 8.5e-23 110.2 87 58.6
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.1e-22 109.8 87 58.6
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.5e-22 109.4 87 58.6
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.9e-22 109.0 88 60.2
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 5.5e-22 107.5 86 57.0
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 5.5e-22 107.5 86 57.0
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.2e-22 107.1 87 56.3
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.6e-21 105.9 86 59.3
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 2.7e-21 105.1 86 55.8
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 6.1e-21 104.0 152 38.2
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 8.0e-21 103.6 86 55.8
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.0e-20 103.2 86 55.8
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 1.0e-20 103.2 86 55.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 5.2e-20 100.9 87 62.1
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.2e-19 99.8 86 57.0
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.0e-19 99.0 86 54.7
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.7e-18 95.9 87 50.6
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.2e-18 95.5 87 49.4
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.2e-18 95.5 87 49.4
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 2.8e-18 95.1 87 60.9
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 3.7e-18 94.7 87 50.6
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 3.7e-18 94.7 85 51.8
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 8.3e-18 93.6 86 52.3
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.4e-17 92.0 90 46.7
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.6e-16 89.4 63 65.1
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.0e-16 89.0 88 52.3
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.0e-15 86.7 88 52.3
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.9e-15 85.1 88 51.1
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 5.0e-15 84.3 87 50.6
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.1e-14 83.2 61 60.7
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.5e-14 82.0 87 51.7
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.5e-14 82.0 87 51.7
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 3.3e-14 81.6 88 42.0
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 4.2e-14 81.3 87 49.4
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 4.2e-14 81.3 64 57.8
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 7.2e-14 80.5 87 50.6
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 7.2e-14 80.5 87 50.6
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 7.2e-14 80.5 87 50.6
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 7.2e-14 80.5 87 48.3
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 9.5e-14 80.1 87 47.1
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.2e-13 79.7 87 49.4
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.6e-13 79.3 88 50.0
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.1e-13 79.0 88 50.0
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.8e-13 78.6 60 60.0
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 4.7e-13 77.8 87 49.4
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 8.0e-13 77.0 87 46.0
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 8.0e-13 77.0 86 40.7
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 1.4e-12 76.3 87 47.1
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 1.8e-12 75.9 87 47.1
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 8.9e-12 73.6 87 42.5
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 2.0e-11 72.4 85 38.8
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.7e-10 69.3 59 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 1.4e-09 66.2 85 34.1
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 1.8e-09 65.9 59 52.5
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.8e-09 65.9 90 35.6
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 1.3e-07 59.7 155 24.5
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.1e-06 56.6 155 24.5
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 7.3e-06 53.9 87 34.5


User provided reference genes

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