Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.7e-88 329.3 166 100.0
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.5e-41 173.3 85 96.5
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.9e-40 169.1 81 98.8
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.6e-38 161.8 83 88.0
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.6e-38 161.8 83 88.0
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.1e-36 157.1 85 80.0
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.1e-36 157.1 106 72.6
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.9e-36 156.4 85 80.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.9e-36 156.4 83 85.5
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 2.5e-36 156.0 83 83.1
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 2.5e-36 156.0 85 83.5
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 4.3e-36 155.2 106 68.9
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 9.6e-36 154.1 85 81.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 9.6e-36 154.1 85 80.0
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.3e-35 153.7 106 68.9
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.6e-35 153.3 85 80.0
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 2.1e-35 152.9 95 75.8
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 4.8e-35 151.8 85 80.0
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 6.2e-35 151.4 85 81.2
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.2e-35 151.4 84 81.0
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 8.1e-35 151.0 85 80.0
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 8.1e-35 151.0 85 78.8
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 8.1e-35 151.0 85 83.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.1e-34 150.6 85 77.6
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-34 150.2 84 79.8
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.4e-34 150.2 84 79.8
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.4e-34 149.4 106 67.0
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 3.1e-34 149.1 106 66.0
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-34 149.1 106 66.0
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-34 149.1 106 66.0
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-34 149.1 106 66.0
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-34 149.1 106 66.0
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 106 66.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 85 76.5
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 106 66.0
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 85 76.5
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.0e-34 148.7 106 66.0
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 106 67.9
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 4.0e-34 148.7 106 67.9
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 5.3e-34 148.3 85 76.5
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 5.3e-34 148.3 85 78.8
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 5.3e-34 148.3 95 69.5
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 5.3e-34 148.3 106 67.9
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.9e-34 147.9 85 78.8
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.9e-34 147.9 85 78.8
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 6.9e-34 147.9 82 79.3
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 6.9e-34 147.9 85 77.6
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 6.9e-34 147.9 82 82.9
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 6.9e-34 147.9 85 76.5
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 6.9e-34 147.9 95 71.6
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 9.0e-34 147.5 106 67.0
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.2e-33 147.1 82 82.9
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.5e-33 146.7 85 78.8
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.5e-33 146.7 82 81.7
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.0e-33 146.4 80 81.2
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.4e-33 145.6 106 63.2
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 3.4e-33 145.6 86 74.4
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 4.5e-33 145.2 106 66.0
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 4.5e-33 145.2 106 65.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 5.8e-33 144.8 85 78.8
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 5.8e-33 144.8 85 75.3
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 7.6e-33 144.4 82 81.7
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.6e-33 144.4 85 75.3
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 7.6e-33 144.4 106 67.0
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.0e-32 144.1 85 75.3
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.0e-32 144.1 83 78.3
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.0e-32 144.1 106 65.1
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.3e-32 143.7 95 72.6
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.3e-32 143.7 86 74.4
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.7e-32 143.3 106 63.2
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.7e-32 143.3 85 74.1
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.7e-32 143.3 85 74.1
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.7e-32 143.3 85 76.5
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 2.9e-32 142.5 85 77.6
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 3.8e-32 142.1 85 71.8
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 4.9e-32 141.7 85 75.3
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 4.9e-32 141.7 83 74.7
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 4.9e-32 141.7 85 77.6
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.5e-32 141.4 85 72.9
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.5e-32 141.4 85 72.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 6.5e-32 141.4 85 71.8
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 8.4e-32 141.0 83 77.1
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.1e-31 140.6 95 67.4
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.1e-31 140.6 104 64.4
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.1e-31 140.6 81 76.5
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.4e-31 140.2 95 68.4
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.4e-31 140.2 86 70.9
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.4e-31 140.2 85 75.3
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.4e-31 140.2 85 75.3
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.9e-31 139.8 82 76.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.5e-31 139.4 85 75.3
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 2.5e-31 139.4 84 77.4
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 4.2e-31 138.7 83 74.7
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 5.5e-31 138.3 83 73.5
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 7.1e-31 137.9 85 74.1
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 7.1e-31 137.9 85 74.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 7.1e-31 137.9 85 74.1
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 7.1e-31 137.9 106 64.2
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 7.1e-31 137.9 84 76.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 74.1
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 74.1
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 9.3e-31 137.5 82 73.2
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 9.3e-31 137.5 85 72.9
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.2e-30 137.1 85 72.9
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.2e-30 137.1 85 72.9
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.2e-30 137.1 85 72.9
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.6e-30 136.7 84 73.8
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.1e-30 136.3 106 63.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 2.1e-30 136.3 106 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.7e-30 136.0 82 73.2
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.7e-30 136.0 83 71.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.7e-30 136.0 84 72.6
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 3.5e-30 135.6 85 71.8
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 3.5e-30 135.6 85 71.8
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 3.5e-30 135.6 85 71.8
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.5e-30 135.6 85 71.8
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 3.5e-30 135.6 85 71.8
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 4.6e-30 135.2 85 71.8
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 7.9e-30 134.4 84 71.4
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 7.9e-30 134.4 85 71.8
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.3e-29 133.7 84 70.2
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 1.1e-28 130.6 85 71.8
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.9e-28 129.8 75 76.0
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 4.3e-28 128.6 79 74.7
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 2.1e-27 126.3 85 68.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-26 124.0 85 68.2
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.3e-24 117.1 93 61.3
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.7e-22 109.4 82 62.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.8e-21 106.7 80 61.2
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.5e-20 103.6 60 78.3
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.1e-18 95.9 131 51.9
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 3.1e-18 95.9 47 87.2
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 9.0e-18 94.4 47 85.1
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.5e-17 93.6 54 74.1
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.5e-17 93.6 54 74.1
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 3.4e-17 92.4 55 74.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.0e-13 80.9 52 82.7
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.0e-13 80.9 54 66.7
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 2.9e-08 62.8 53 60.4
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 6.5e-08 61.6 65 56.9
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.2e-07 59.3 77 44.2
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.4e-07 57.8 38 68.4
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-06 56.2 38 65.8
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-06 56.2 38 65.8
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-06 56.2 38 65.8
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-06 55.1 35 71.4
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-06 55.1 35 71.4


User provided reference genes

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