Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.2e-49 199.9 134 100.0
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 9.2e-13 77.4 47 80.9
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-12 75.9 39 92.3
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-12 75.9 39 92.3
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 3.5e-12 75.5 40 90.0
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.0e-11 73.9 38 92.1
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.0e-11 73.9 38 92.1
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.0e-11 73.9 39 89.7
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.0e-11 73.9 38 92.1
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.3e-11 73.6 48 75.0
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.3e-11 73.6 49 73.5
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.3e-11 73.6 38 92.1
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.7e-11 73.2 38 89.5
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.0e-11 72.4 38 89.5
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 3.0e-11 72.4 38 94.7
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 3.0e-11 72.4 39 89.7
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 8.6e-11 70.9 39 92.3
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.1e-10 70.5 38 92.1
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.1e-10 70.5 39 87.2
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.5e-10 70.1 38 86.8
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-10 70.1 52 69.2
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.5e-10 70.1 52 69.2
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.9e-10 69.7 41 80.5
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.9e-10 69.7 48 70.8
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 3.3e-10 68.9 50 72.0
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 3.3e-10 68.9 38 92.1
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 3.3e-10 68.9 37 89.2
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.3e-10 68.9 39 84.6
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 4.3e-10 68.6 39 82.1
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 4.3e-10 68.6 121 42.1
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 4.3e-10 68.6 40 87.5
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 7.3e-10 67.8 37 89.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 9.6e-10 67.4 125 44.8
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.2e-09 67.0 39 84.6
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.2e-09 67.0 50 66.0
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-09 67.0 38 81.6
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-09 67.0 38 81.6
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-09 67.0 38 81.6
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.2e-09 67.0 123 44.7
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.6e-09 66.6 39 84.6
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.1e-09 66.2 37 81.1
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.1e-09 66.2 34 94.1
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-09 66.2 88 45.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.1e-09 66.2 38 81.6
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.6e-09 65.5 36 83.3
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 6.2e-09 64.7 50 66.0
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 8.1e-09 64.3 35 85.7
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 8.1e-09 64.3 39 74.4
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 8.1e-09 64.3 118 43.2
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 1.1e-08 63.9 56 66.1
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-08 63.9 34 91.2
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.8e-08 63.2 131 43.5
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 2.4e-08 62.8 121 42.1
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 2.4e-08 62.8 36 80.6
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.4e-08 62.8 50 58.0
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.1e-08 62.4 130 43.8
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 3.1e-08 62.4 36 80.6
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.0e-08 62.0 44 61.4
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.2e-08 61.6 119 40.3
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 6.8e-08 61.2 32 90.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 8.9e-08 60.8 124 41.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 8.9e-08 60.8 38 78.9
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.5e-07 60.1 47 55.3
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.5e-07 60.1 41 75.6
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 1.5e-07 60.1 137 40.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-07 60.1 138 40.6
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-07 60.1 138 40.6
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-07 60.1 137 40.9
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.0e-07 59.7 40 72.5
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.0e-07 59.7 127 43.3
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-07 59.7 137 40.1
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.6e-07 59.3 38 68.4
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.6e-07 59.3 121 39.7
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 2.6e-07 59.3 38 68.4
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.6e-07 59.3 132 35.6
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 2.6e-07 59.3 33 84.8
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 4.4e-07 58.5 133 39.1
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 5.8e-07 58.2 50 54.0
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 5.8e-07 58.2 39 64.1
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 9.9e-07 57.4 46 58.7
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 9.9e-07 57.4 44 56.8
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.3e-06 57.0 37 64.9
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.3e-06 57.0 50 60.0
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.7e-06 56.6 40 75.0
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.7e-06 56.6 40 75.0
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.7e-06 56.6 37 64.9
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.2e-06 56.2 38 71.1
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 3.8e-06 55.5 42 57.1
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.9e-06 55.1 40 60.0
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.9e-06 55.1 36 63.9
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 4.9e-06 55.1 35 77.1
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.9e-06 55.1 36 63.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.9e-06 55.1 36 63.9
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 4.9e-06 55.1 36 66.7
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.9e-06 55.1 39 56.4
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 4.9e-06 55.1 37 62.2
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 6.4e-06 54.7 37 67.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 6.4e-06 54.7 35 71.4
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 6.4e-06 54.7 32 84.4
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 6.4e-06 54.7 38 60.5
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 6.4e-06 54.7 41 63.4
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 6.4e-06 54.7 39 59.0
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 8.4e-06 54.3 40 60.0
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 8.4e-06 54.3 32 75.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 8.4e-06 54.3 36 63.9
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 8.4e-06 54.3 30 83.3


User provided reference genes

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