Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.9e-56 222.2 111 100.0
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 1.7e-20 102.8 88 62.5
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.4e-19 99.8 107 54.2
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 5.5e-19 97.8 86 59.3
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 7.1e-19 97.4 85 61.2
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.1e-18 95.9 84 59.5
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 7.9e-18 94.0 87 56.3
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 7.9e-18 94.0 87 52.9
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.0e-17 93.6 93 53.8
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 1.3e-17 93.2 88 54.5
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 3.0e-17 92.0 82 57.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 3.9e-17 91.7 85 60.0
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 5.1e-17 91.3 87 56.3
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 6.7e-17 90.9 88 56.8
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 6.7e-17 90.9 92 56.5
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 8.7e-17 90.5 83 55.4
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 8.7e-17 90.5 83 56.6
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.5e-16 89.7 88 53.4
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 1.9e-16 89.4 87 55.2
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.5e-16 89.0 91 54.9
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 4.3e-16 88.2 86 57.0
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 7.4e-16 87.4 86 55.8
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 1.3e-15 86.7 86 54.7
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.3e-15 86.7 84 53.6
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.6e-15 86.3 86 52.3
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 2.2e-15 85.9 87 50.6
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 2.2e-15 85.9 87 51.7
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 6.3e-15 84.3 82 52.4
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.1e-14 83.6 82 51.2
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.4e-14 83.2 86 51.2
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 1.8e-14 82.8 84 51.2
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.8e-14 82.8 82 47.6
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 1.8e-14 82.8 82 47.6
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.8e-14 82.8 108 46.3
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.8e-14 82.8 108 46.3
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 2.4e-14 82.4 103 44.7
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.4e-14 82.4 82 56.1
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 5.3e-14 81.3 82 50.0
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 5.3e-14 81.3 88 47.7
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 5.3e-14 81.3 82 47.6
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 5.3e-14 81.3 85 52.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 9.0e-14 80.5 82 48.8
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 1.2e-13 80.1 83 50.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 1.2e-13 80.1 82 48.8
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.2e-13 80.1 82 46.3
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.5e-13 79.7 87 50.6
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.5e-13 79.7 82 52.4
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 3.4e-13 78.6 111 40.5
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 5.9e-13 77.8 90 46.7
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 7.6e-13 77.4 95 46.3
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.0e-12 77.0 94 44.7
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.3e-12 76.6 83 48.2
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.3e-12 76.6 83 48.2
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 2.2e-12 75.9 88 48.9
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 2.9e-12 75.5 83 45.8
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 2.9e-12 75.5 83 45.8
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 2.9e-12 75.5 83 45.8
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 3.8e-12 75.1 83 45.8
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 5.0e-12 74.7 78 51.3
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.0e-12 74.7 79 51.9
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 5.0e-12 74.7 86 50.0
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 5.0e-12 74.7 82 41.5
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 6.5e-12 74.3 82 41.5
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 6.5e-12 74.3 78 48.7
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 6.5e-12 74.3 82 47.6
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 1.4e-11 73.2 82 41.5
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.9e-11 72.8 87 46.0
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.9e-11 72.8 89 46.1
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.2e-11 72.0 82 48.8
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 4.2e-11 71.6 87 42.5
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 4.2e-11 71.6 82 40.2
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 4.2e-11 71.6 82 40.2
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 4.2e-11 71.6 90 47.8
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 4.2e-11 71.6 71 52.1
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 4.2e-11 71.6 90 45.6
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 7.2e-11 70.9 83 45.8
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.6e-10 69.7 87 46.0
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 4.6e-10 68.2 82 42.7
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.9e-10 67.4 70 51.4
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.0e-09 65.5 88 45.5
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.1e-09 64.7 88 44.3
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 7.4e-08 60.8 92 38.0
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.3e-07 60.1 87 36.8
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.7e-07 58.5 88 38.6
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.8e-06 56.2 69 46.4
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 2.4e-06 55.8 78 35.9


User provided reference genes

Program Settings