Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 4.4e-99 365.9 458 100.0
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.3e-21 108.6 88 73.9
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 4.5e-19 100.1 101 56.4
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.0e-18 99.0 102 57.8
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 3.6e-16 90.5 102 54.9
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 1.0e-15 89.0 90 58.9
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 1.8e-15 88.2 100 55.0
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 4.0e-15 87.0 91 53.8
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 6.8e-15 86.3 102 49.0
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 8.9e-15 85.9 103 47.6
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 8.9e-15 85.9 97 49.5
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.2e-14 85.5 99 57.6
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.0e-14 84.7 99 57.6
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.4e-14 84.0 98 50.0
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 3.4e-14 84.0 95 60.0
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 3.4e-14 84.0 100 55.0
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 3.4e-14 84.0 108 46.3
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 5.8e-14 83.2 102 46.1
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 9.8e-14 82.4 103 45.6
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.3e-13 82.0 92 51.1
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.3e-13 82.0 99 56.6
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 3.7e-13 80.5 98 48.0
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 3.7e-13 80.5 95 53.7
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 3.7e-13 80.5 91 53.8
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 4.9e-13 80.1 102 45.1
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 4.9e-13 80.1 102 45.1
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 4.9e-13 80.1 93 53.8
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 6.4e-13 79.7 95 52.6
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-13 79.3 101 52.5
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-13 79.3 101 52.5
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-13 79.3 101 52.5
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.1e-12 79.0 97 51.5
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 1.4e-12 78.6 86 59.3
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 1.9e-12 78.2 97 47.4
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 1.9e-12 78.2 97 47.4
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 1.9e-12 78.2 97 47.4
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 1.9e-12 78.2 101 51.5
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 4.1e-12 77.0 97 46.4
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 4.1e-12 77.0 92 48.9
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 4.1e-12 77.0 85 50.6
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 9.2e-12 75.9 89 51.7
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 1.6e-11 75.1 98 48.0
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.6e-11 75.1 85 49.4
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.0e-11 74.7 85 49.4
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 2.0e-11 74.7 98 45.9
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 2.0e-11 74.7 98 45.9
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-11 74.7 101 50.5
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 2.7e-11 74.3 98 49.0
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 2.7e-11 74.3 114 43.0
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 3.5e-11 73.9 109 45.9
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 4.6e-11 73.6 95 48.4
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 4.6e-11 73.6 95 48.4
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 4.6e-11 73.6 110 47.3
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 7.8e-11 72.8 93 45.2
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 7.8e-11 72.8 92 47.8
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 7.8e-11 72.8 92 47.8
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.3e-10 72.0 90 45.6
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 1.7e-10 71.6 87 48.3
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.7e-10 71.6 110 46.4
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 3.0e-10 70.9 89 46.1
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 3.9e-10 70.5 104 43.3
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 3.9e-10 70.5 92 46.7
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 3.9e-10 70.5 92 46.7
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 6.6e-10 69.7 103 46.6
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.6e-10 69.3 96 50.0
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 1.1e-09 68.9 88 46.6
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.1e-09 68.9 99 49.5
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-09 68.9 99 46.5
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 1.9e-09 68.2 99 48.5
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.9e-09 68.2 89 46.1
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 1.9e-09 68.2 98 44.9
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.5e-09 67.8 92 45.7
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 3.3e-09 67.4 92 43.5
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 3.3e-09 67.4 94 54.3
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 3.3e-09 67.4 91 48.4
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.3e-09 67.0 99 45.5
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 5.6e-09 66.6 98 42.9
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 7.3e-09 66.2 105 41.9
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 7.3e-09 66.2 85 45.9
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 9.5e-09 65.9 107 43.9
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 9.5e-09 65.9 102 47.1
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 9.5e-09 65.9 90 42.2
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 1.2e-08 65.5 94 46.8
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 1.6e-08 65.1 92 47.8
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 2.1e-08 64.7 107 43.9
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 2.8e-08 64.3 47 59.6
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 2.8e-08 64.3 100 39.0
Migut.L01738 Erythranthe guttata HOM05D013674 ORTHO05D006108 3.6e-08 63.9 100 41.0
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 4.7e-08 63.5 123 36.6
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 6.2e-08 63.2 99 43.4
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 1.1e-07 62.4 102 45.1
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 1.1e-07 62.4 111 43.2
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 1.4e-07 62.0 93 44.1
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 1.4e-07 62.0 98 41.8
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 1.8e-07 61.6 99 42.4
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 1.8e-07 61.6 104 42.3
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 5.2e-07 60.1 105 41.0
Lj1g0021486 Lotus japonicus HOM05D013121 ORTHO05D015407 8.9e-07 59.3 134 36.6
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 8.9e-07 59.3 108 39.8
Glyma.13G149000 Glycine max HOM05D013674 ORTHO05D006108 1.2e-06 58.9 80 48.8
Ca_11604_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 1.5e-06 58.5 37 70.3
Ca_12340_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 1.5e-06 58.5 37 70.3
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 72 48.6
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 72 48.6
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 72 48.6
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 44 61.4
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 95 44.2
Medtr7g103280 Medicago truncatula HOM05D013121 ORTHO05D015407 1.5e-06 58.5 125 36.8
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 1.5e-06 58.5 99 45.5
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 2.0e-06 58.2 97 38.1
Cc06_g04960 Coffea canephora HOM05D011389 ORTHO05D006108 2.0e-06 58.2 83 50.6
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-06 58.2 44 61.4
Lj5g0014301 Lotus japonicus HOM05D036014 ORTHO05D006108 2.0e-06 58.2 81 49.4
VMungo0720G1050 Vigna mungo HOM05D013674 ORTHO05D004088 2.6e-06 57.8 39 69.2
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.4e-06 57.0 44 59.1
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.4e-06 57.0 44 61.4
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 5.8e-06 56.6 99 44.4
Phvul.007G225200 Phaseolus vulgaris HOM05D013674 ORTHO05D006108 5.8e-06 56.6 43 69.8
Psat6g077640 Pisum sativum HOM05D013674 ORTHO05D006108 5.8e-06 56.6 37 70.3
Medtr1g061730 Medicago truncatula HOM05D013674 ORTHO05D006108 7.5e-06 56.2 37 70.3
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.8e-06 55.8 72 47.2


User provided reference genes

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