Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.9e-96 354.8 176 100.0
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 6.4e-46 188.0 113 77.0
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 3.2e-45 185.7 147 62.6
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 3.2e-45 185.7 117 71.8
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 9.2e-45 184.1 119 73.1
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.2e-44 183.7 117 73.5
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.2e-44 183.7 119 76.5
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.6e-44 183.3 132 69.7
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 6.0e-44 181.4 132 65.9
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 7.8e-44 181.0 118 72.0
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 2.3e-43 179.5 119 73.9
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 3.0e-43 179.1 152 58.6
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 5.0e-43 178.3 120 70.0
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 6.6e-43 177.9 126 67.5
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 8.6e-43 177.6 118 71.2
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 8.6e-43 177.6 142 60.6
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.1e-42 177.2 143 61.5
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.1e-42 177.2 142 59.9
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.1e-42 177.2 110 71.8
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.1e-42 177.2 142 61.3
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.5e-42 176.8 117 68.4
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 3.3e-42 175.6 141 61.0
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 5.6e-42 174.9 119 71.4
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.6e-41 173.3 153 58.2
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.1e-41 172.9 118 69.5
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.8e-41 172.6 113 72.6
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.6e-41 172.2 108 76.9
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.2e-41 171.4 113 72.6
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 6.2e-41 171.4 113 72.6
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 8.1e-41 171.0 142 59.2
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.1e-40 170.6 117 65.8
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.8e-40 169.9 141 60.3
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 6.8e-40 167.9 130 63.1
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.0e-39 166.4 118 65.3
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 2.0e-39 166.4 144 57.6
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.4e-39 165.6 118 65.3
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.5e-39 164.5 118 64.4
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.5e-39 164.5 118 64.4
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 3.7e-38 162.2 148 54.7
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.7e-38 162.2 119 64.7
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.9e-38 161.8 117 65.0
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 8.3e-38 161.0 120 64.2
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.1e-37 160.6 148 54.7
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.9e-37 159.8 120 64.2
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.9e-37 159.8 132 59.8
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 3.2e-37 159.1 111 66.7
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 9.2e-37 157.5 147 58.5
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 1.2e-36 157.1 120 64.2
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 4.6e-36 155.2 121 66.1
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.6e-36 155.2 111 68.5
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 6.0e-36 154.8 114 62.3
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.0e-35 152.5 124 60.5
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 3.9e-35 152.1 127 59.8
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.1e-34 150.6 107 66.4
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.1e-34 150.6 120 61.7
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 4.3e-34 148.7 120 61.7
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 5.6e-34 148.3 147 55.8
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 9.5e-34 147.5 145 55.2
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 8.1e-33 144.4 128 53.9
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 8.1e-33 144.4 127 60.6
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.4e-32 143.7 147 55.1
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 2.4e-32 142.9 131 52.7
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 8.9e-32 141.0 128 54.7
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.2e-31 140.6 129 54.3
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.2e-31 140.6 128 51.6
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 1.5e-31 140.2 133 52.6
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 1.5e-31 140.2 146 50.7
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 2.6e-31 139.4 118 59.3
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 7.6e-31 137.9 129 52.7
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 9.9e-31 137.5 127 52.8
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.3e-30 137.1 129 52.7
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.3e-30 137.1 121 57.9
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.7e-30 136.7 128 51.6
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 2.9e-30 136.0 100 66.0
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 2.9e-30 136.0 132 56.8
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 4.9e-30 135.2 129 52.7
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 4.9e-30 135.2 115 60.0
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 4.9e-30 135.2 126 51.6
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.9e-29 133.3 100 63.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.4e-29 132.9 105 57.1
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 3.2e-29 132.5 131 51.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 3.2e-29 132.5 131 51.1
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 4.1e-29 132.1 131 51.9
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 4.1e-29 132.1 131 50.4
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 4.1e-29 132.1 129 49.6
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 5.4e-29 131.7 132 50.0
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 5.4e-29 131.7 85 75.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 9.2e-29 131.0 102 62.7
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 9.2e-29 131.0 128 54.7
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 2.7e-28 129.4 108 58.3
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 3.5e-28 129.0 124 51.6
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 6.0e-28 128.3 138 51.4
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 7.8e-28 127.9 120 57.5
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.3e-27 127.1 144 47.2
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 8.7e-27 124.4 146 43.8
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 8.7e-27 124.4 120 52.5
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.3e-26 122.1 112 55.4
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 1.6e-25 120.2 123 51.2
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 3.6e-25 119.0 100 55.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 6.2e-25 118.2 123 49.6
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 8.1e-25 117.9 117 53.0
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.8e-24 116.7 108 51.9
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 3.1e-24 115.9 132 47.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 4.0e-24 115.5 92 55.4
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.4e-23 112.1 136 41.9
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.3e-22 110.5 119 51.3
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 2.9e-22 109.4 87 64.4
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.1e-21 107.5 118 54.2
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.1e-21 107.5 118 54.2
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.6e-20 102.1 112 50.9
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.3e-19 100.5 130 46.2
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 6.6e-19 98.2 60 73.3
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 7.3e-18 94.7 86 54.7
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 5.3e-16 88.6 86 52.3
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.5e-15 87.0 86 51.2
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.5e-15 87.0 86 51.2
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.5e-15 87.0 70 55.7
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.9e-13 80.1 50 70.0
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.9e-13 80.1 50 70.0
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 1.2e-12 77.4 99 44.4
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.3e-11 73.2 51 66.7
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.9e-10 70.1 87 42.5
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 5.6e-10 68.6 120 36.7
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 8.1e-09 64.7 75 46.7
Oeu023852.1 Olea europaea HOM05D006043 ORTHO05D007309 1.7e-06 57.0 118 35.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.7e-06 57.0 67 47.8
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 3.8e-06 55.8 84 38.1


User provided reference genes

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