Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.9e-219 765.0 404 100.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.1e-173 612.1 402 79.1
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.2e-170 601.7 406 76.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.6e-169 598.6 404 76.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 4.7e-169 598.2 404 75.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.0e-168 597.0 399 77.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.8e-168 596.3 405 75.1
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.3e-168 595.9 404 76.7
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.5e-167 593.2 404 74.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.4e-167 592.0 404 76.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 4.9e-166 588.2 419 73.3
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 6.3e-166 587.8 399 76.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 6.3e-166 587.8 398 76.9
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-165 587.0 404 74.5
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.8e-165 586.3 404 74.5
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.8e-165 586.3 404 74.5
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.8e-165 586.3 405 75.6
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.4e-165 585.9 407 74.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 4.1e-165 585.1 405 73.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 4.1e-165 585.1 405 73.8
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.4e-165 584.7 404 75.0
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.2e-164 583.6 406 75.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.5e-164 582.0 404 73.3
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.9e-164 581.3 402 77.9
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 7.8e-164 580.9 404 74.3
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.7e-163 579.7 404 73.3
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.3e-163 579.3 399 73.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.9e-163 578.9 400 75.0
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.9e-163 578.9 407 74.4
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.9e-163 578.9 407 74.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 3.8e-163 578.6 406 73.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 5.0e-163 578.2 404 73.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 6.6e-163 577.8 399 74.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-162 577.0 409 73.8
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.5e-162 576.6 404 74.5
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.5e-162 576.6 409 73.8
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-162 576.2 409 72.6
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.3e-162 575.5 409 72.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.3e-162 575.5 409 72.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.6e-162 574.7 409 72.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.6e-162 574.7 406 76.1
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 5.6e-162 574.7 407 75.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.3e-162 574.3 404 73.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 9.5e-162 573.9 404 72.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 9.5e-162 573.9 401 75.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.6e-161 572.0 404 72.5
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 8.0e-161 570.9 404 71.8
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.8e-160 569.7 406 73.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 3.0e-160 568.9 409 73.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 4.0e-160 568.5 408 73.5
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.0e-160 568.5 406 73.2
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.8e-160 567.8 409 71.9
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.8e-160 567.8 406 74.1
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 8.9e-160 567.4 401 74.6
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 8.9e-160 567.4 401 73.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 8.9e-160 567.4 404 71.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.2e-159 567.0 404 72.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.5e-159 566.6 409 71.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.4e-159 565.5 406 72.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.4e-159 565.1 388 74.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 9.8e-159 563.9 402 74.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-158 563.5 402 74.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.2e-158 562.8 404 72.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 6.4e-158 561.2 404 71.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.1e-157 560.5 410 72.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.2e-157 558.9 400 71.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.5e-156 555.4 399 72.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.6e-156 555.1 404 71.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.0e-155 553.9 406 71.7
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.3e-155 552.7 405 71.6
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.0e-155 552.4 405 69.6
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 3.0e-155 552.4 439 65.6
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 3.9e-155 552.0 402 72.9
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.1e-154 550.4 404 71.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.9e-154 549.7 400 73.8
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-154 549.7 405 71.9
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 4.3e-154 548.5 406 71.2
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.1e-153 546.2 404 71.8
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.1e-153 546.2 404 71.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.6e-153 545.4 406 70.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 6.2e-153 544.7 406 70.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 6.2e-153 544.7 406 71.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 8.0e-153 544.3 402 71.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.1e-152 542.3 401 70.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.2e-152 541.6 402 71.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 6.8e-152 541.2 406 70.2
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.2e-151 540.4 406 70.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.0e-151 539.7 403 70.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.7e-150 535.4 450 63.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 4.9e-150 535.0 402 69.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.2e-149 532.3 404 68.3
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 5.4e-149 531.6 406 72.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.2e-148 530.4 405 71.1
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.7e-148 529.3 412 68.4
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.5e-148 528.9 406 69.5
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.5e-148 528.9 404 68.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.6e-148 528.5 453 64.2
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.0e-147 527.3 404 69.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 6.6e-147 524.6 406 66.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.1e-146 523.9 397 66.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.9e-146 523.1 399 66.4
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.9e-146 523.1 397 66.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.3e-146 522.3 406 68.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.3e-146 522.3 412 68.4
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.1e-145 519.6 443 65.2
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.0e-143 513.1 407 69.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.9e-142 509.2 430 61.6
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 3.7e-142 508.8 416 68.5
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 3.7e-142 508.8 404 67.1
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 6.4e-142 508.1 406 66.3
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 8.3e-142 507.7 406 64.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-141 506.1 404 68.3
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 4.6e-140 501.9 406 64.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.9e-138 496.5 405 63.0
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 3.1e-136 489.2 399 62.7
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 5.8e-135 485.0 403 65.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 8.4e-134 481.1 404 60.4
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 4.3e-130 468.8 333 74.2
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.8e-126 455.7 374 63.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.2e-124 450.7 338 70.1
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.1e-123 445.3 519 51.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.8e-118 429.1 376 60.1
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 7.4e-114 414.8 404 54.7
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.4e-112 409.8 294 72.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.0e-111 406.8 435 55.6
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.6e-111 404.8 442 56.1
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.6e-108 397.1 404 57.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.2e-102 376.7 406 51.0
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.2e-102 376.7 406 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.2e-94 350.1 398 48.7
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.8e-94 349.4 406 55.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.9e-83 312.8 408 44.9
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 6.3e-81 305.4 404 50.0
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.9e-77 293.9 203 73.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.2e-69 266.5 358 45.5
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 9.1e-64 248.4 429 39.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-61 240.4 277 54.9
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.4e-61 238.4 299 45.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.2e-53 212.2 165 70.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-41 174.1 144 67.4
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.8e-28 130.6 419 30.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.8e-28 130.6 102 64.7
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 105 57.1
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.6e-23 114.8 128 50.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.6e-23 113.2 93 61.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-21 108.2 187 41.2
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.0e-19 100.1 82 67.1
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.2e-19 99.8 73 61.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 8.4e-17 92.4 440 25.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.7e-15 87.4 69 66.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.5e-15 87.0 60 68.3
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 7.8e-15 85.9 451 22.0
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.7e-14 82.4 379 25.3
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.6e-13 79.7 68 54.4
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-12 78.2 62 74.2
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.8e-10 69.7 62 61.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 7.8e-07 59.3 86 45.3
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 1.7e-06 58.2 44 70.5


User provided reference genes

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