Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 1.2e-55 219.9 136 100.0
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 9.1e-16 87.4 66 63.6
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 9.1e-16 87.4 66 63.6
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 3.4e-15 85.5 67 61.2
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.3e-14 83.6 70 67.1
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.3e-14 83.6 67 59.7
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 2.9e-14 82.4 65 61.5
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 2.9e-14 82.4 67 61.2
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 2.9e-14 82.4 65 58.5
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 5.0e-14 81.6 65 61.5
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 8.5e-14 80.9 65 58.5
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 8.5e-14 80.9 71 57.7
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 8.5e-14 80.9 67 59.7
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 1.1e-13 80.5 67 58.2
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.4e-13 80.1 71 56.3
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 1.9e-13 79.7 67 58.2
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 3.2e-13 79.0 65 60.0
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 3.2e-13 79.0 67 56.7
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 4.2e-13 78.6 71 54.9
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.2e-13 78.6 71 49.3
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 4.2e-13 78.6 66 56.1
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 5.5e-13 78.2 63 60.3
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 7.2e-13 77.8 65 53.8
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 7.2e-13 77.8 65 58.5
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 7.2e-13 77.8 65 58.5
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 7.2e-13 77.8 65 58.5
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 7.2e-13 77.8 65 53.8
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 7.2e-13 77.8 65 53.8
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 1.2e-12 77.0 65 56.9
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 2.1e-12 76.3 66 53.0
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 2.1e-12 76.3 63 55.6
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.1e-12 76.3 65 56.9
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 2.1e-12 76.3 68 51.5
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 2.1e-12 76.3 68 58.8
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.7e-12 75.9 65 56.9
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 3.6e-12 75.5 69 50.7
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 3.6e-12 75.5 65 56.9
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 3.6e-12 75.5 65 52.3
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 3.6e-12 75.5 65 52.3
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 3.6e-12 75.5 70 52.9
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.7e-12 75.1 65 58.5
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 6.1e-12 74.7 65 56.9
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 6.1e-12 74.7 65 56.9
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 6.1e-12 74.7 65 52.3
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 7.9e-12 74.3 65 55.4
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 7.9e-12 74.3 67 52.2
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 7.9e-12 74.3 67 55.2
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 7.9e-12 74.3 66 59.1
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 1.0e-11 73.9 72 48.6
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 2.3e-11 72.8 67 52.2
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 2.3e-11 72.8 67 53.7
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 2.3e-11 72.8 71 52.1
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 5.1e-11 71.6 71 49.3
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 5.1e-11 71.6 66 53.0
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 1.1e-10 70.5 65 53.8
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 2.0e-10 69.7 67 53.7
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 5.7e-10 68.2 68 50.0
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.8e-09 65.9 70 45.7
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 2.4e-08 62.8 65 49.2
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.2e-07 60.5 65 47.7
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 2.0e-07 59.7 63 41.3
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 3.4e-07 58.9 63 50.8
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 3.4e-07 58.9 66 45.5
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.0e-06 57.4 67 43.3
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 1.0e-06 57.4 67 46.3
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 1.0e-06 57.4 65 43.1
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 1.3e-06 57.0 66 45.5
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.3e-06 57.0 67 44.8
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.7e-06 56.6 71 43.7
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 2.2e-06 56.2 71 40.8
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 2.2e-06 56.2 67 41.8
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.9e-06 55.8 67 43.3
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 2.9e-06 55.8 65 41.5
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.9e-06 55.8 66 47.0
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 2.9e-06 55.8 64 42.2
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 3.8e-06 55.5 58 44.8
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 3.8e-06 55.5 58 44.8
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 3.8e-06 55.5 66 39.4
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 3.8e-06 55.5 62 43.5
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 3.8e-06 55.5 65 43.1
AUR62011910 Chenopodium quinoa HOM05D001004 ORTHO05D000653 5.0e-06 55.1 71 39.4
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 5.0e-06 55.1 65 40.0
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.0e-06 55.1 65 40.0
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 5.0e-06 55.1 65 41.5
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.0e-06 55.1 65 41.5
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.5e-06 54.7 65 40.0
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 6.5e-06 54.7 65 41.5
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 6.5e-06 54.7 65 41.5
Glyma.13G120600 Glycine max HOM05D001004 ORTHO05D000653 8.5e-06 54.3 65 41.5
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 8.5e-06 54.3 65 44.6


User provided reference genes

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