Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 4.1e-47 191.0 96 100.0
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 1.2e-33 146.4 86 77.9
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 9.2e-31 136.7 87 74.7
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 1.2e-30 136.3 87 75.9
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 3.5e-30 134.8 87 74.7
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 7.8e-30 133.7 87 73.6
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 7.8e-30 133.7 87 73.6
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 7.8e-30 133.7 87 74.7
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 7.8e-30 133.7 87 75.9
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 73.6
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 73.6
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 73.6
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 72.4
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 67.8
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 67.8
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 67.8
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 72.4
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 3.0e-29 131.7 87 72.4
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 3.9e-29 131.3 87 71.3
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 3.9e-29 131.3 87 71.3
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 3.9e-29 131.3 87 71.3
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 6.6e-29 130.6 87 72.4
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 8.6e-29 130.2 87 70.1
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 8.6e-29 130.2 87 70.1
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 8.6e-29 130.2 87 71.3
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 8.6e-29 130.2 87 71.3
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.1e-28 129.8 87 71.3
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 1.1e-28 129.8 87 70.1
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 70.1
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 72.4
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 72.4
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 72.4
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 70.1
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 70.1
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 71.3
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 1.5e-28 129.4 87 70.1
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.9e-28 129.0 87 69.0
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.9e-28 129.0 87 71.3
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 2.5e-28 128.6 87 70.1
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 2.5e-28 128.6 87 70.1
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 2.5e-28 128.6 87 69.0
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 2.5e-28 128.6 87 69.0
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 3.3e-28 128.3 87 69.0
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 4.3e-28 127.9 87 70.1
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 4.3e-28 127.9 93 66.7
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 4.3e-28 127.9 93 66.7
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 5.6e-28 127.5 87 71.3
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 7.3e-28 127.1 93 66.7
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 7.3e-28 127.1 87 70.1
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 7.3e-28 127.1 87 70.1
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 1.2e-27 126.3 86 72.1
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 1.2e-27 126.3 93 65.6
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.2e-27 126.3 87 69.0
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 1.6e-27 125.9 87 69.0
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.6e-27 125.9 87 67.8
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 1.6e-27 125.9 93 65.6
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.1e-27 125.6 87 66.7
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.8e-27 125.2 87 66.7
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 3.6e-27 124.8 87 70.1
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 3.6e-27 124.8 87 66.7
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 3.6e-27 124.8 87 69.0
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 4.7e-27 124.4 87 67.8
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 6.2e-27 124.0 86 70.9
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 6.2e-27 124.0 86 70.9
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 6.2e-27 124.0 86 70.9
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 6.2e-27 124.0 87 65.5
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 8.0e-27 123.6 86 68.6
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 8.0e-27 123.6 86 68.6
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 8.0e-27 123.6 87 69.0
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 1.1e-26 123.2 87 65.5
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 1.1e-26 123.2 86 68.6
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 1.1e-26 123.2 87 69.0
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 1.1e-26 123.2 93 61.3
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.1e-26 123.2 86 68.6
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.1e-26 123.2 87 66.7
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 1.4e-26 122.9 86 68.6
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 65.5
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 67.8
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 67.8
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 67.8
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 67.8
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 67.8
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 66.7
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 64.4
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.8e-26 122.5 87 66.7
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 3.1e-26 121.7 87 66.7
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 4.0e-26 121.3 86 68.6
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.0e-26 121.3 86 67.4
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.0e-26 121.3 86 67.4
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 4.0e-26 121.3 86 67.4
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 4.0e-26 121.3 87 65.5
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 4.0e-26 121.3 87 66.7
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 5.2e-26 120.9 87 69.0
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 5.2e-26 120.9 87 63.2
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 5.2e-26 120.9 86 62.8
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 6.8e-26 120.6 87 66.7
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 8.9e-26 120.2 88 67.0
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 8.9e-26 120.2 87 64.4
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 8.9e-26 120.2 87 64.4
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 63.2
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 64.4
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 62.1
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 1.2e-25 119.8 93 57.0
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 1.2e-25 119.8 86 66.3
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 64.4
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 64.4
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 1.5e-25 119.4 81 69.1
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 1.5e-25 119.4 81 69.1
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 2.0e-25 119.0 87 62.1
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 2.0e-25 119.0 87 64.4
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 2.0e-25 119.0 87 64.4
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 2.0e-25 119.0 87 64.4
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 3.4e-25 118.2 87 63.2
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 3.4e-25 118.2 86 65.1
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 4.4e-25 117.9 87 63.2
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 4.4e-25 117.9 88 65.9
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 4.4e-25 117.9 87 63.2
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 4.4e-25 117.9 89 66.3
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 5.8e-25 117.5 85 63.5
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 7.5e-25 117.1 87 60.9
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 7.5e-25 117.1 87 60.9
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 7.5e-25 117.1 87 60.9
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 7.5e-25 117.1 87 60.9
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 7.5e-25 117.1 87 60.9
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 7.5e-25 117.1 88 65.9
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 9.8e-25 116.7 87 60.9
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 9.8e-25 116.7 88 65.9
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 2.9e-24 115.2 87 64.4
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 3.7e-24 114.8 87 63.2
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 3.7e-24 114.8 87 60.9
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 3.7e-24 114.8 96 55.2
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 4.9e-24 114.4 87 63.2
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 4.9e-24 114.4 87 57.5
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 6.4e-24 114.0 110 55.5
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 1.4e-23 112.8 96 53.1
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 1.9e-23 112.5 81 66.7
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 2.4e-23 112.1 87 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 1.2e-22 109.8 80 65.0
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 1.2e-22 109.8 80 66.2
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 1.2e-22 109.8 87 62.1
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 1.6e-22 109.4 88 59.1
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 2.1e-22 109.0 88 63.6
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 3.5e-22 108.2 87 56.3
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 3.5e-22 108.2 87 56.3
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.6e-22 107.8 88 63.6
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.6e-22 107.8 88 63.6
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 4.6e-22 107.8 86 60.5
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 1.0e-21 106.7 93 54.8
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 2.3e-21 105.5 81 61.7
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.5e-20 102.8 143 43.4
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 2.5e-20 102.1 79 62.0
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 1.2e-19 99.8 71 71.8
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 1.2e-19 99.8 89 56.2
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 4.0e-18 94.7 152 38.8
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 8.9e-18 93.6 88 56.8
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 8.9e-18 93.6 84 59.5
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 1.2e-17 93.2 78 56.4
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 2.9e-16 88.6 55 76.4
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 2.9e-16 88.6 56 75.0
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 4.9e-16 87.8 56 73.2
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 6.4e-16 87.4 72 62.5
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 1.4e-15 86.3 56 69.6
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 1.9e-15 85.9 56 73.2
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 7.1e-15 84.0 87 54.0
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 2.1e-14 82.4 88 43.2
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 2.7e-14 82.0 96 44.8
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 4.6e-14 81.3 70 52.9
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 4.6e-14 81.3 67 59.7
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 9.6e-12 73.6 81 42.0
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.6e-11 72.8 95 49.5


User provided reference genes

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