Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.1e-85 318.9 157 100.0
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 2.0e-43 179.5 150 60.7
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 2.7e-40 169.1 158 57.0
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.6e-40 168.7 153 56.2
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 4.7e-40 168.3 157 55.4
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 6.1e-40 167.9 154 54.5
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.8e-39 166.4 156 55.1
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.3e-39 166.0 156 54.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.0e-39 165.6 137 59.1
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.5e-38 163.3 156 53.2
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 2.6e-38 162.5 156 54.5
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 2.6e-38 162.5 161 54.7
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 4.4e-38 161.8 156 52.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 4.4e-38 161.8 148 54.1
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 5.7e-38 161.4 149 53.7
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 9.7e-38 160.6 156 51.9
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.3e-37 160.2 170 50.6
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 3.7e-37 158.7 160 55.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 6.3e-37 157.9 141 55.3
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.1e-36 157.1 142 57.7
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 3.1e-36 155.6 137 54.7
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 4.1e-36 155.2 125 59.2
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 7.0e-36 154.5 155 52.3
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 2.6e-35 152.5 166 51.8
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 3.5e-35 152.1 156 51.3
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 4.5e-35 151.8 156 51.9
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 4.5e-35 151.8 145 55.2
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 5.9e-35 151.4 146 56.2
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 5.9e-35 151.4 156 51.9
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 7.7e-35 151.0 139 56.8
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.2e-34 149.4 157 51.0
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 2.2e-34 149.4 130 56.9
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.2e-34 149.4 157 49.7
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 5.0e-34 148.3 153 52.9
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 6.5e-34 147.9 148 50.7
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 6.5e-34 147.9 145 56.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 1.1e-33 147.1 149 55.0
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.1e-33 147.1 143 51.7
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.1e-33 147.1 142 53.5
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.9e-33 146.4 153 53.6
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.9e-33 146.4 149 55.0
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.5e-33 146.0 141 52.5
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 2.5e-33 146.0 171 46.2
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 4.2e-33 145.2 149 52.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 5.5e-33 144.8 155 51.0
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 5.5e-33 144.8 155 51.0
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 9.4e-33 144.1 141 50.4
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 9.4e-33 144.1 133 57.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 9.4e-33 144.1 133 57.1
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.6e-32 143.3 147 52.4
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.6e-32 143.3 145 53.8
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 2.1e-32 142.9 125 59.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.7e-32 142.5 151 49.0
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.6e-32 142.1 155 50.3
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 6.1e-32 141.4 140 50.7
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 6.1e-32 141.4 138 52.2
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 6.1e-32 141.4 130 53.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 1.4e-31 140.2 156 45.5
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.8e-31 139.8 143 50.3
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 6.7e-31 137.9 143 50.3
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 6.7e-31 137.9 143 50.3
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.0e-30 136.3 121 54.5
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 4.4e-30 135.2 131 50.4
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 4.4e-30 135.2 174 45.4
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 5.7e-30 134.8 158 46.8
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 5.7e-30 134.8 138 48.6
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 7.5e-30 134.4 118 54.2
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 9.7e-30 134.0 133 48.1
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.3e-29 133.7 147 48.3
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.7e-29 133.3 117 56.4
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 2.2e-29 132.9 114 54.4
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 3.7e-29 132.1 121 52.1
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 6.3e-29 131.3 116 56.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 8.2e-29 131.0 143 48.3
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 4.1e-28 128.6 132 52.3
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 4.1e-28 128.6 135 49.6
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.2e-27 127.1 131 51.1
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.7e-27 125.9 130 50.0
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 3.5e-27 125.6 107 57.9
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.5e-27 125.6 115 52.2
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.5e-27 125.6 135 48.9
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 4.5e-27 125.2 137 49.6
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.0e-26 124.0 137 51.8
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.9e-26 122.5 161 41.6
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 3.8e-26 122.1 180 40.6
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.1e-25 120.6 143 47.6
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 1.5e-25 120.2 147 40.1
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.9e-25 119.8 100 56.0
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.5e-25 119.4 127 50.4
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.2e-25 119.0 133 48.9
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 4.2e-25 118.6 100 56.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 5.5e-25 118.2 99 57.6
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 5.5e-25 118.2 99 57.6
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 7.2e-25 117.9 152 45.4
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 9.4e-25 117.5 118 50.8
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 6.1e-24 114.8 117 46.2
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.3e-23 112.8 145 43.4
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 6.8e-23 111.3 120 47.5
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 6.8e-23 111.3 119 47.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.5e-22 110.2 160 41.2
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 5.7e-22 108.2 112 47.3
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 2.2e-21 106.3 68 69.1
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 4.8e-21 105.1 115 49.6
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 9.1e-20 100.9 131 41.2
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 5.9e-19 98.2 91 51.6
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 6.5e-18 94.7 93 49.5
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.5e-17 92.8 101 47.5
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.1e-16 89.7 106 42.5
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 3.3e-09 65.9 62 53.2
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 4.3e-09 65.5 76 44.7
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 7.3e-09 64.7 54 57.4
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 3.6e-08 62.4 52 53.8
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.7e-08 62.0 114 35.1
Thecc.09G241500 Theobroma cacao HOM05D001312 ORTHO05D001832 6.8e-07 58.2 74 43.2
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 8.9e-07 57.8 55 49.1
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 2.0e-06 56.6 50 54.0
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.6e-06 56.2 102 31.4
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 4.4e-06 55.5 125 31.2


User provided reference genes

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