Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 0.0e+00 1462.6 764 100.0
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.2e-300 1035.4 764 69.4
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.1e-287 992.3 765 66.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 9.8e-285 983.4 770 66.0
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.5e-280 968.8 769 64.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.8e-279 965.3 761 65.3
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.0e-278 963.4 760 65.4
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.8e-271 938.7 760 64.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 2.6e-269 932.2 750 64.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.7e-266 922.2 765 61.8
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 7.8e-266 920.6 766 62.4
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.0e-265 920.2 764 63.6
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.1e-264 916.8 777 61.3
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.6e-264 914.4 767 62.7
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 3.6e-263 911.8 735 64.4
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.1e-262 910.2 761 63.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.8e-262 909.4 759 61.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.3e-262 909.1 764 61.9
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.1e-262 908.7 764 61.6
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.2e-262 907.9 762 62.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.5e-261 906.4 761 60.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 9.9e-261 903.7 773 61.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 9.2e-259 897.1 764 61.6
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.6e-258 896.3 759 61.8
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.5e-258 895.2 764 61.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-257 893.3 775 61.5
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.6e-256 887.9 761 61.6
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 4.7e-255 884.8 737 63.1
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.7e-255 884.8 773 60.9
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 9.0e-254 880.6 765 59.1
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.4e-253 878.6 809 58.6
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.8e-252 875.2 768 59.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 6.4e-252 874.4 715 63.2
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.1e-251 873.6 761 58.5
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 9.3e-251 870.5 765 59.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.0e-249 867.1 765 59.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 6.6e-249 864.4 760 59.1
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 4.3e-248 861.7 765 59.5
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 9.6e-248 860.5 762 58.7
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.8e-247 859.0 763 59.8
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.6e-247 858.6 776 57.9
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.8e-246 856.3 765 57.6
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 2.4e-246 855.9 771 58.5
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 4.0e-246 855.1 785 58.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 6.9e-246 854.4 765 59.5
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.0e-245 852.8 763 58.8
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 4.5e-245 851.7 763 58.6
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.3e-244 850.1 759 58.4
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.8e-244 848.6 764 59.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.4e-243 846.7 763 58.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 2.1e-242 842.8 786 57.8
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 6.0e-242 841.3 789 57.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.0e-241 839.0 765 57.1
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.1e-240 837.0 761 56.9
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.9e-240 836.3 736 59.9
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 3.3e-240 835.5 760 56.4
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.3e-239 833.6 767 55.7
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 4.0e-238 828.6 762 58.0
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 9.0e-238 827.4 766 56.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.3e-236 823.5 764 55.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.2e-236 822.8 765 57.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.2e-236 822.8 765 56.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.9e-236 822.4 774 56.2
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 6.4e-236 821.2 766 56.4
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 3.9e-233 812.0 771 56.3
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.1e-232 810.4 787 55.5
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.9e-232 809.7 688 61.5
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 4.3e-232 808.5 776 55.7
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.1e-231 806.2 780 55.6
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.0e-230 802.0 780 55.4
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.0e-230 802.0 766 56.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.1e-226 789.6 730 58.4
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 6.7e-225 784.6 765 56.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-222 777.3 731 57.7
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.4e-222 776.2 767 53.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 6.9e-222 774.6 763 55.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.7e-220 770.0 806 51.5
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.5e-220 767.7 767 55.4
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 3.3e-216 755.7 766 55.0
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 5.9e-213 745.0 577 65.9
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.1e-211 740.7 764 51.8
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.1e-208 730.7 753 55.8
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 5.7e-208 728.4 733 55.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 4.8e-207 725.3 765 51.1
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.0e-205 719.9 738 55.4
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.5e-205 718.8 574 62.4
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.9e-203 713.4 569 64.1
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.0e-201 706.1 710 56.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.0e-201 706.1 568 64.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 3.0e-201 706.1 569 64.0
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 3.3e-200 702.6 569 63.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 2.8e-199 699.5 763 51.8
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.1e-198 697.6 761 49.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.6e-192 676.4 658 53.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-192 675.2 764 48.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 1.1e-190 671.0 568 60.9
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 5.9e-189 665.2 573 59.2
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.0e-185 654.4 764 49.0
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.5e-184 650.6 581 58.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.7e-183 647.1 639 54.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 8.3e-183 644.8 516 64.3
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.1e-179 634.4 746 48.4
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.8e-177 625.2 530 62.8
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.4e-176 622.5 461 69.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 5.7e-176 622.1 529 60.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.6e-162 576.2 505 58.8
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 4.7e-162 575.9 766 44.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 3.0e-148 530.0 784 39.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.8e-145 518.8 530 51.1
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.6e-144 516.9 638 45.0
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 4.5e-120 436.4 333 66.1
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.6e-117 427.9 439 50.8
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.7e-117 427.2 479 49.5
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 8.4e-111 405.6 539 44.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.2e-109 401.7 326 64.1
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 7.9e-109 399.1 291 69.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 6.1e-101 372.9 385 54.3
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 8.8e-100 369.0 816 29.8
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-94 352.1 284 63.0
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.8e-92 344.7 479 43.4
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.1e-89 335.5 284 61.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 7.7e-88 329.3 263 67.7
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.9e-86 324.7 741 30.0
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-80 304.3 226 67.3
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 4.5e-80 303.5 776 28.4
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 9.1e-73 279.3 357 42.6
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 3.6e-69 267.3 177 75.1
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 6.6e-63 246.5 222 59.0
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.8e-58 231.1 758 26.3
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-57 228.8 217 52.1
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 7.8e-56 223.0 186 61.8
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 3.0e-47 194.5 240 48.3
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.2e-45 189.1 141 68.8
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 8.3e-42 176.4 245 42.9
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 9.5e-38 162.9 187 48.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.9e-36 156.4 416 31.2
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-35 154.5 416 31.0
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 3.8e-26 124.4 111 62.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 6.0e-24 117.1 88 64.8
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.1e-21 106.7 294 28.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.5e-19 102.4 85 55.3
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 5.8e-19 100.5 99 52.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-16 92.4 72 66.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.1e-15 87.4 127 42.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.6e-14 84.0 215 31.6
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.1e-12 78.2 64 62.5
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-10 71.6 87 40.2
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.8e-07 62.4 109 38.5
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.1e-06 59.7 67 50.7
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 1.1e-06 59.7 59 45.8


User provided reference genes

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