Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.5e-70 268.1 126 100.0
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 94.4
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 94.4
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 94.4
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 2.7e-67 258.5 126 95.2
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.7e-67 258.5 126 95.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 94.4
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 94.4
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.0e-66 256.5 126 94.4
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 94.4
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 94.4
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-66 255.0 126 92.9
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.0e-66 255.0 126 93.7
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 94.4
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 92.9
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 92.9
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 92.1
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 93.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 93.7
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.9
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.1
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.1
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.9
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.4e-65 251.1 126 92.1
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.4e-65 251.1 126 92.1
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 4.4e-65 251.1 126 92.9
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.7e-65 250.8 126 92.1
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 5.7e-65 250.8 126 92.1
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 92.1
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 9.8e-65 250.0 124 92.7
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 9.8e-65 250.0 124 92.7
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 91.3
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 92.1
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 92.1
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 92.1
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 90.5
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 91.3
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 92.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 89.7
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 91.3
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 90.5
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 90.5
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 91.3
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 89.7
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.1e-63 246.5 125 89.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-63 246.5 125 89.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-63 246.5 125 89.6
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 89.7
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.4e-63 246.1 126 91.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.8e-63 245.7 126 88.9
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.8e-63 245.7 126 88.9
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.8e-63 245.7 126 89.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 2.4e-63 245.4 123 91.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.4e-63 245.4 124 91.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 88.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.4e-63 245.4 126 88.1
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.1e-63 245.0 125 88.8
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 4.1e-63 244.6 121 92.6
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 88.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 88.9
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.1
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.1
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.1
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.0e-62 242.3 120 92.5
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 88.1
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.9
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.9
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.9
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 87.3
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 88.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.9e-62 240.7 124 88.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 5.9e-62 240.7 124 88.7
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 88.1
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.7e-62 240.4 121 92.6
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.7e-61 239.2 126 88.1
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.7e-61 239.2 124 87.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.7e-61 239.2 124 87.9
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.7e-61 239.2 120 91.7
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 87.9
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 3.8e-61 238.0 126 87.3
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 6.6e-61 237.3 126 87.3
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 6.6e-61 237.3 126 87.3
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 8.6e-61 236.9 126 86.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.9
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 1.9e-60 235.7 151 76.2
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.5e-60 235.3 120 90.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.1
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.9
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 9.5e-60 233.4 120 89.2
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.6e-59 232.6 119 90.8
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.6e-59 232.6 119 90.8
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.6e-59 232.6 119 90.8
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.6e-59 232.6 112 94.6
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 84.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 84.9
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.1e-59 232.3 119 89.9
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 2.8e-59 231.9 123 87.0
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.8e-59 231.9 157 73.2
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 3.6e-59 231.5 124 88.7
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 4.7e-59 231.1 124 86.3
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 6.1e-59 230.7 124 86.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.0e-58 228.0 126 82.5
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 6.8e-58 227.3 130 83.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.9e-58 226.9 126 82.5
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 5.7e-57 224.2 120 85.0
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 7.5e-57 223.8 171 65.5
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 3.7e-56 221.5 128 82.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 2.4e-55 218.8 114 88.6
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 7.0e-55 217.2 124 83.9
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 7.0e-55 217.2 126 77.0
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.0e-53 213.4 114 85.1
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 5.0e-53 211.1 112 87.5
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 5.0e-53 211.1 120 76.7
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.6e-53 210.7 108 90.7
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.6e-53 210.7 109 87.2
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-48 195.7 154 64.9
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 3.9e-45 184.9 124 75.8
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.3e-42 175.6 100 84.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 5.2e-42 174.5 94 84.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 3.4e-41 171.8 87 89.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.3e-40 169.9 82 93.9
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 6.4e-40 167.5 134 65.7
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 6.4e-40 167.5 85 90.6
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.1e-39 166.8 82 92.7
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 7.1e-39 164.1 82 91.5
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.6e-38 162.9 77 94.8
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 3.5e-38 161.8 82 90.2
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 6.0e-38 161.0 126 64.3
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.0e-37 160.2 83 89.2
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 8.6e-37 157.1 82 86.6
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.5e-36 156.4 78 92.3
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.9e-36 156.0 110 70.0
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.3e-36 154.1 177 48.6
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 2.3e-34 149.1 78 88.5
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 8.9e-34 147.1 78 88.5
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 8.9e-34 147.1 124 58.9
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 8.4e-32 140.6 118 57.6
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.2e-30 136.7 87 77.0
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 6.0e-30 134.4 64 95.3
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 7.8e-30 134.0 73 83.6
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.6e-25 119.0 123 53.7
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 2.6e-25 119.0 123 53.7
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.7e-24 116.3 58 89.7
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 4.6e-22 108.2 58 87.9
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.3e-21 105.9 57 87.7
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 8.4e-16 87.4 44 90.9


User provided reference genes

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