Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.3e-279 964.9 477 100.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.8e-151 540.0 452 59.1
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 6.4e-149 531.6 464 58.2
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 6.4e-149 531.6 456 58.1
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 8.1e-144 514.6 469 55.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 5.2e-143 511.9 449 56.3
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 2.9e-141 506.1 451 57.0
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.1e-140 504.2 462 55.2
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.1e-140 504.2 479 53.9
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-140 503.8 457 56.0
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.4e-140 503.1 457 55.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.0e-138 497.7 458 54.6
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-138 496.9 461 55.1
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.9e-138 495.7 460 54.1
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.6e-138 495.0 459 54.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.6e-138 495.0 461 54.9
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.1e-137 494.2 457 54.5
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.5e-137 493.8 461 54.9
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.3e-137 492.7 449 54.6
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-136 490.0 459 54.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-136 490.0 459 54.9
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-135 487.6 454 55.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.0e-134 483.4 454 55.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.9e-133 478.8 458 53.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.9e-132 476.9 448 54.7
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 7.1e-132 474.9 456 53.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.7e-131 473.0 463 52.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 3.5e-131 472.6 465 52.3
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.3e-130 470.7 462 52.2
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.1e-130 468.8 452 53.1
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.5e-129 467.2 472 51.7
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 3.3e-129 466.1 460 51.5
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.3e-129 465.7 458 52.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.8e-128 463.0 470 53.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 6.9e-127 458.4 455 51.9
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.0e-126 456.8 454 52.2
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.8e-126 455.3 455 52.1
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-126 454.5 453 51.9
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-126 454.5 453 51.9
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 7.1e-124 448.4 471 50.3
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 9.3e-124 448.0 462 51.5
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 6.0e-123 445.3 449 51.4
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.7e-122 443.7 452 50.2
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.1e-122 442.2 451 51.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 3.3e-121 439.5 427 53.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.6e-120 437.2 452 50.7
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.8e-120 436.4 455 51.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.1e-119 434.5 421 52.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.4e-119 434.1 365 58.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.4e-119 434.1 448 50.0
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 5.3e-119 432.2 451 50.8
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.5e-118 430.6 453 50.6
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.6e-118 428.3 493 47.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.9e-118 427.9 449 49.0
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.7e-117 427.2 369 56.1
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 2.2e-117 426.8 452 49.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.2e-117 426.8 449 48.8
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.2e-117 426.8 456 50.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.9e-117 426.4 455 49.9
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.9e-116 423.7 454 50.0
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 2.7e-115 419.9 383 56.4
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.7e-115 419.9 443 50.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 3.5e-115 419.5 447 49.9
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.9e-114 416.0 460 47.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.7e-114 415.2 451 48.6
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 8.7e-114 414.8 450 48.4
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.5e-113 413.3 446 51.3
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.6e-112 410.6 448 48.4
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 6.2e-112 408.7 460 46.7
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 2.4e-111 406.8 453 49.4
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.3e-111 405.6 451 49.4
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.5e-110 402.5 452 47.1
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 5.8e-110 402.1 390 52.1
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.3e-109 401.0 446 48.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 2.7e-107 393.3 361 54.8
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 6.0e-107 392.1 457 47.7
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.7e-106 388.7 364 54.1
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.1e-105 387.9 364 52.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.9e-105 387.1 375 52.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.5e-105 386.7 477 45.5
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.6e-105 384.8 380 52.4
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 9.6e-105 384.8 452 46.0
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.1e-104 383.6 444 46.8
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.4e-103 380.2 443 47.6
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.6e-102 375.2 392 50.5
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 7.1e-100 368.6 458 44.5
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 7.9e-99 365.2 300 59.7
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.1e-95 352.8 455 45.3
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 5.3e-95 352.4 455 43.7
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.5e-94 350.9 452 44.7
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 2.6e-94 350.1 460 43.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.6e-94 350.1 348 50.9
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 5.9e-94 349.0 457 45.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.3e-93 347.8 456 45.6
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.9e-93 346.7 452 43.6
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.9e-92 344.0 453 45.3
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 9.3e-92 341.7 454 44.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 4.3e-89 332.8 419 43.2
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.1e-87 326.6 452 42.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 7.7e-86 322.0 293 56.3
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-83 314.7 454 41.4
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.7e-83 313.5 541 37.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.6e-83 313.2 551 35.9
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.0e-81 307.4 378 45.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 6.3e-80 302.4 325 48.9
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 3.4e-78 296.6 349 46.7
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.9e-77 293.5 459 41.2
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.8e-74 282.0 441 37.9
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.1e-71 273.5 309 47.6
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.9e-70 269.2 400 38.0
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.2e-68 263.5 420 36.2
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.3e-66 257.3 357 44.3
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.9e-60 237.7 497 31.2
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.4e-55 220.7 564 28.2
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 3.1e-55 220.3 341 40.2
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 4.2e-52 209.9 252 44.4
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.0e-50 203.8 573 28.3
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.5e-49 201.4 172 56.4
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.3e-48 198.4 157 60.5
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.4e-47 194.9 389 34.4
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-42 178.3 274 39.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-40 171.4 134 58.2
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.4e-39 166.4 145 52.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.4e-39 166.4 169 50.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-38 165.2 171 48.0
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.5e-28 131.7 213 37.1
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 2.6e-25 120.9 98 57.1
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 7.5e-25 119.4 155 41.3
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 4.9e-24 116.7 111 53.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 4.3e-20 103.6 160 41.9
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 4.1e-15 87.0 58 69.0
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.4e-10 72.0 54 61.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 9.9e-09 65.9 52 53.8
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 2.2e-08 64.7 84 44.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 8.4e-08 62.8 38 71.1


User provided reference genes

Program Settings