Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.9e-33 143.3 77 100.0
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.1e-21 106.3 75 80.0
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.5e-20 100.9 75 77.3
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.6e-20 100.1 75 76.0
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-17 92.0 75 72.0
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.5e-15 85.9 74 64.9
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.1e-13 78.2 70 57.1
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 6.9e-13 77.0 76 56.6
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 9.1e-13 76.6 73 61.6
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 9.1e-13 76.6 71 60.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 9.1e-13 76.6 71 60.6
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.2e-12 76.3 70 61.4
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.5e-12 75.9 70 57.1
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.6e-12 75.1 70 54.3
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.4e-12 74.7 65 67.7
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 7.7e-12 73.6 78 52.6
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 7.7e-12 73.6 73 60.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.0e-11 73.2 70 60.0
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 1.7e-11 72.4 76 52.6
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-11 72.0 78 50.0
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-11 72.0 78 50.0
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.9e-11 71.6 64 65.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 3.8e-11 71.2 78 56.4
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 3.8e-11 71.2 78 56.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 3.8e-11 71.2 76 59.2
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.8e-11 71.2 73 61.6
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 5.0e-11 70.9 78 56.4
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 6.5e-11 70.5 72 59.7
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 8.5e-11 70.1 76 60.5
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 8.5e-11 70.1 81 55.6
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.1e-10 69.7 77 59.7
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.1e-10 69.7 80 55.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-10 69.7 65 63.1
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-10 69.7 67 53.7
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.4e-10 69.3 77 58.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.9e-10 68.9 71 59.2
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.9e-10 68.9 83 54.2
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.9e-10 68.9 82 54.9
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.5e-10 68.6 66 54.5
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.2e-10 67.8 70 57.1
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 4.2e-10 67.8 78 55.1
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 4.2e-10 67.8 67 61.2
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 5.5e-10 67.4 79 46.8
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 5.5e-10 67.4 77 50.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.2e-10 67.0 74 55.4
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.2e-10 67.0 74 55.4
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 9.4e-10 66.6 53 58.5
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 9.4e-10 66.6 79 53.2
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 9.4e-10 66.6 73 58.9
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.2e-09 66.2 64 62.5
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 1.6e-09 65.9 57 59.6
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.6e-09 65.9 71 57.7
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 1.6e-09 65.9 77 54.5
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 1.6e-09 65.9 77 53.2
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.1e-09 65.5 77 54.5
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.1e-09 65.5 67 61.2
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 2.7e-09 65.1 73 54.8
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.7e-09 65.1 70 57.1
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.7e-09 65.1 73 56.2
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 2.7e-09 65.1 73 53.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.7e-09 65.1 72 56.9
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 3.6e-09 64.7 77 54.5
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.6e-09 64.3 70 55.7
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.6e-09 64.3 66 57.6
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 4.6e-09 64.3 72 54.2
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 4.6e-09 64.3 65 63.1
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 4.6e-09 64.3 57 57.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 6.1e-09 63.9 77 51.9
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 6.1e-09 63.9 59 61.0
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 7.9e-09 63.5 58 60.3
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.0e-08 63.2 64 54.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.0e-08 63.2 66 60.6
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.8 94 40.4
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.4e-08 62.8 75 52.0
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.4e-08 62.8 80 51.2
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 1.4e-08 62.8 65 63.1
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.4e-08 62.8 65 63.1
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 1.4e-08 62.8 71 63.4
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.8e-08 62.4 77 51.9
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 1.8e-08 62.4 57 54.4
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.8e-08 62.4 67 56.7
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.8e-08 62.4 54 63.0
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.3e-08 62.0 72 55.6
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.3e-08 62.0 63 60.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.0e-08 61.6 72 54.2
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 3.0e-08 61.6 73 52.1
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.1e-08 60.8 71 50.7
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 5.1e-08 60.8 71 54.9
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 6.7e-08 60.5 78 46.2
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 8.8e-08 60.1 71 54.9
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 8.8e-08 60.1 75 49.3
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 8.8e-08 60.1 70 54.3
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.1e-07 59.7 80 45.0
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.1e-07 59.7 52 65.4
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.1e-07 59.7 80 47.5
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-07 59.7 63 60.3
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 1.1e-07 59.7 68 52.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.5e-07 59.3 79 51.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.5e-07 59.3 79 51.9
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.0e-07 58.9 59 59.3
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 2.0e-07 58.9 59 52.5
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.6e-07 58.5 71 54.9
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.6e-07 58.5 60 48.3
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.6e-07 58.5 67 59.7
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.3e-07 58.2 75 54.7
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.3e-07 58.2 79 51.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 3.3e-07 58.2 71 53.5
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 3.3e-07 58.2 88 47.7
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 4.4e-07 57.8 71 52.1
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 4.4e-07 57.8 57 50.9
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 5.7e-07 57.4 67 55.2
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.7e-07 57.4 49 69.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 9.7e-07 56.6 74 48.6
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 9.7e-07 56.6 66 47.0
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 9.7e-07 56.6 69 42.0
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-06 56.2 64 57.8
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.3e-06 56.2 80 42.5
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.7e-06 55.8 65 50.8
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-06 55.8 74 50.0
MELO3C012630.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.7e-06 55.8 72 47.2
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 1.7e-06 55.8 51 66.7
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.7e-06 55.8 72 50.0
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-06 55.8 65 60.0
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.2e-06 55.5 71 52.1
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 2.2e-06 55.5 70 48.6
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.2e-06 55.5 68 48.5
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-06 55.5 60 53.3
CsaV3_7G022690 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.8e-06 55.1 72 47.2
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 2.8e-06 55.1 39 61.5
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.8e-06 55.1 72 44.4
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.7e-06 54.7 71 52.1
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 3.7e-06 54.7 77 50.6
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 4.8e-06 54.3 72 51.4
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 4.8e-06 54.3 47 63.8
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 4.8e-06 54.3 75 50.7
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 6.3e-06 53.9 70 44.3
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 6.3e-06 53.9 72 51.4
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.3e-06 53.9 63 60.3
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 6.3e-06 53.9 88 40.9
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.3e-06 53.9 59 55.9
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.3e-06 53.9 51 60.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.3e-06 53.9 72 43.1
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 8.2e-06 53.5 65 56.9


User provided reference genes

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