Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 2851.2 1476 100.0
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1709.5 1512 60.7
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1699.5 1500 60.4
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1681.4 1512 60.3
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1678.3 1445 61.2
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1669.8 1515 60.9
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1667.9 1498 59.7
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1662.9 1519 59.2
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1662.5 1424 61.2
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1653.6 1495 60.0
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1647.9 1499 59.8
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1629.8 1520 59.3
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1624.8 1518 58.7
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1621.7 1520 58.4
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1619.0 1460 59.2
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1615.9 1503 58.6
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1614.4 1517 58.3
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1594.7 1518 57.3
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1573.9 1424 59.6
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1572.0 1475 58.1
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1565.1 1475 58.2
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1565.1 1426 58.1
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1562.4 1531 55.5
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1554.7 1376 60.3
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1531.9 1425 58.3
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1469.9 1504 54.2
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1439.9 1463 54.2
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1436.4 1451 55.3
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1434.5 1529 52.5
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1422.9 1446 52.9
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1422.9 1446 52.8
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1418.7 1524 52.2
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1418.7 1528 52.4
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1413.7 1531 51.7
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1411.0 1467 54.1
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1394.4 1465 54.2
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1393.3 1409 53.9
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1383.2 1458 53.6
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1379.8 1459 53.4
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1379.4 1465 52.9
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1379.4 1468 52.8
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1379.4 1564 49.6
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1370.9 1458 52.5
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1368.2 1463 52.6
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1365.9 1483 53.1
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1363.2 1467 53.4
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1332.8 1536 49.3
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1328.5 1228 58.9
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1327.0 1458 49.7
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1323.5 1496 50.2
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1291.6 1596 47.4
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1273.8 1565 47.5
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1255.4 1323 52.8
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1173.3 1514 47.3
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1173.3 1330 50.8
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 1.2e-294 1017.3 1200 48.9
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 7.2e-284 981.5 914 58.6
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.5e-281 973.8 797 68.0
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 8.2e-280 968.0 967 55.2
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 5.0e-277 958.7 1265 44.3
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 2.7e-270 936.4 966 53.7
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 8.8e-266 921.4 1249 43.8
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 7.2e-260 901.7 1454 38.7
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 1.5e-257 894.0 1488 37.8
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 5.4e-247 859.0 1051 45.4
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.9e-183 647.9 552 62.9
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.9e-183 647.9 676 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 2.5e-180 637.5 1228 34.9
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 2.9e-176 624.0 635 54.2
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 6.1e-166 589.7 534 57.3
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 4.4e-164 583.6 751 45.8
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 7.3e-143 513.1 969 34.2
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.7e-128 465.3 366 64.8
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 1.0e-112 412.9 701 39.4
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.0e-67 263.5 210 67.6
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 9.7e-63 246.9 259 52.9
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.7e-55 221.1 311 44.1
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.9e-51 208.8 200 57.5
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.1e-45 190.3 133 72.9
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.6e-44 186.4 149 63.8
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 8.5e-43 180.6 220 47.3
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 2.5e-42 179.1 204 48.5
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-41 176.8 238 41.2
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.4e-40 173.3 157 54.8
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 1.9e-34 152.9 124 64.5
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 6.1e-33 147.9 215 38.6
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.5e-23 114.4 194 43.3
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 3.2e-21 109.0 109 56.0
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.2e-20 107.1 110 50.0
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.0e-19 104.0 130 43.1
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 7.3e-18 97.8 83 59.0
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 2.1e-17 96.3 116 42.2
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 2.1e-17 96.3 116 42.2
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 1.1e-16 94.0 116 41.4
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 3.2e-13 82.4 53 75.5
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 5.0e-11 75.1 71 52.1
CBR_g54163 Chara braunii HOM05D007170 ORTHO05D009243 6.6e-11 74.7 202 29.2
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.2e-09 70.5 116 44.8
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 6.2e-09 68.2 40 80.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 6.8e-08 64.7 120 33.3
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 2.0e-07 63.2 119 29.4


User provided reference genes

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