Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00872 Eucalyptus grandis HOM05D000641 ORTHO05D009503 2.7e-92 342.0 180 100.0
Eucgr.K00166 Eucalyptus grandis HOM05D000641 ORTHO05D009503 1.9e-53 213.0 153 79.1
Eucgr.K00991 Eucalyptus grandis HOM05D000641 ORTHO05D009503 2.7e-52 209.1 157 75.8
Thhalv10025380m.g Eutrema salsugineum HOM05D000641 ORTHO05D009503 1.2e-12 77.4 175 35.4
CARHR232590 Cardamine hirsuta HOM05D000641 ORTHO05D009503 2.1e-12 76.6 119 39.5
C01p20610 Brassica napus HOM05D000641 ORTHO05D009503 4.7e-12 75.5 119 41.2
BolC1t01992H Brassica oleracea HOM05D000641 ORTHO05D009503 4.7e-12 75.5 119 41.2
PGR142G1585 Punica granatum HOM05D000641 ORTHO05D009503 6.2e-12 75.1 172 37.2
FvH4_7g27280 Fragaria vesca HOM05D000641 ORTHO05D009503 1.1e-11 74.3 162 37.7
MD01G1181900 Malus domestica HOM05D000641 ORTHO05D009503 1.4e-11 73.9 175 40.0
FAN06G1376 Fragaria x ananassa HOM05D000641 ORTHO05D009503 1.8e-11 73.6 163 38.7
FAN06G5028 Fragaria x ananassa HOM05D000641 ORTHO05D009503 1.8e-11 73.6 163 38.7
VMungo1080G1510 Vigna mungo HOM05D000641 ORTHO05D009503 2.3e-11 73.2 118 41.5
Haze_13894 Corylus avellana HOM05D000641 ORTHO05D009503 3.1e-11 72.8 154 38.3
AT4G25190 Arabidopsis thaliana HOM05D000641 ORTHO05D009503 4.0e-11 72.4 176 35.2
Migut.F00487 Erythranthe guttata HOM05D000641 ORTHO05D009503 4.0e-11 72.4 145 40.7
FAN10G0113 Fragaria x ananassa HOM05D000641 ORTHO05D009503 6.8e-11 71.6 165 37.6
Cfa008148 Carpinus fangiana HOM05D000641 ORTHO05D009503 8.9e-11 71.2 166 37.3
Dinv06573 Davidia involucrata HOM05D000641 ORTHO05D009503 1.2e-10 70.9 155 38.7
FAN03G1792 Fragaria x ananassa HOM05D000641 ORTHO05D009503 1.5e-10 70.5 165 37.0
A03p55810 Brassica napus HOM05D000641 ORTHO05D009503 2.0e-10 70.1 121 38.0
BraA03t14649Z Brassica rapa HOM05D000641 ORTHO05D009503 2.0e-10 70.1 121 38.0
FAN01G2651 Fragaria x ananassa HOM05D000641 ORTHO05D009503 2.0e-10 70.1 164 35.4
TWI39G0625 Tripterygium wilfordii HOM05D000641 ORTHO05D009503 2.0e-10 70.1 168 39.9
C07p54090 Brassica napus HOM05D000641 ORTHO05D009503 3.4e-10 69.3 169 33.1
BolC7t45895H Brassica oleracea HOM05D000641 ORTHO05D009503 4.4e-10 68.9 119 37.8
Manes.06G133400 Manihot esculenta HOM05D000641 ORTHO05D009503 4.4e-10 68.9 165 38.8
Sp7g23210 Schrenkiella parvula HOM05D000641 ORTHO05D009503 7.5e-10 68.2 162 33.3
Aa31LG7G10390 Aethionema arabicum HOM05D000641 ORTHO05D009503 9.8e-10 67.8 94 45.7
AL7G27960 Arabidopsis lyrata HOM05D000641 ORTHO05D009503 9.8e-10 67.8 175 33.7
Carub.0007s1584 Capsella rubella HOM05D000641 ORTHO05D009503 9.8e-10 67.8 177 33.3
AUR62015434 Chenopodium quinoa HOM05D000641 ORTHO05D009503 1.3e-09 67.4 109 41.3
Prupe.2G275600 Prunus persica HOM05D000641 ORTHO05D009503 1.3e-09 67.4 166 38.6
AUR62002222 Chenopodium quinoa HOM05D003096 ORTHO05D003521 1.7e-09 67.0 109 41.3
RcHm_v2.0_Chr1g0374111 Rosa chinensis HOM05D000641 ORTHO05D009503 1.7e-09 67.0 128 38.3
QL09p005284 Quercus lobata HOM05D000641 ORTHO05D009503 2.9e-09 66.2 102 45.1
CsaV3_3G050080 Cucumis sativus L. HOM05D000641 ORTHO05D009503 3.7e-09 65.9 155 38.7
Medtr3g408360 Medicago truncatula HOM05D000641 ORTHO05D009503 4.9e-09 65.5 175 38.3
arahy.Tifrunner.gnm1.ann1.20MRK9 Arachis hypogaea HOM05D000641 ORTHO05D009503 6.4e-09 65.1 116 43.1
CANSAT56G4329 Cannabis sativa HOM05D000641 ORTHO05D009503 6.4e-09 65.1 99 41.4
Glyma.06G318000 Glycine max HOM05D000641 ORTHO05D009503 1.4e-08 63.9 191 35.1
MD07G1252100 Malus domestica HOM05D000641 ORTHO05D009503 1.4e-08 63.9 84 46.4
SGA_v2.0_scaffold2G01221 Striga asiatica HOM05D000641 ORTHO05D009503 1.9e-08 63.5 100 43.0
BcaC06g32833 Brassica carinata HOM05D000641 ORTHO05D009503 2.4e-08 63.2 120 40.8
COL.COLO4_14100 Corchorus olitorius HOM05D000641 ORTHO05D009503 2.4e-08 63.2 184 34.2
arahy.Tifrunner.gnm1.ann1.TAG6ZD Arachis hypogaea HOM05D000641 ORTHO05D009503 3.2e-08 62.8 178 32.6
Duzib068G1481 Durio zibethinus HOM05D000641 ORTHO05D009503 3.2e-08 62.8 115 36.5
Nitab4.5_0003647g0030 Nicotiana tabacum HOM05D000641 ORTHO05D009503 4.1e-08 62.4 176 36.4
MELO3C003310.2 Cucumis melo HOM05D000641 ORTHO05D009503 7.0e-08 61.6 164 36.6
arahy.Tifrunner.gnm1.ann1.W6IUV8 Arachis hypogaea HOM05D000641 ORTHO05D009503 9.2e-08 61.2 99 44.4
CANSAT56G1736 Cannabis sativa HOM05D000641 ORTHO05D009503 9.2e-08 61.2 100 44.0
Phvul.005G008600 Phaseolus vulgaris HOM05D000641 ORTHO05D009503 9.2e-08 61.2 171 32.2
arahy.Tifrunner.gnm1.ann1.YH4NKV Arachis hypogaea HOM05D000641 ORTHO05D009503 1.2e-07 60.8 112 42.9
Cpa.g.sc13.292 Carica papaya HOM05D000641 ORTHO05D009503 1.2e-07 60.8 97 45.4
Ca_14101_v3 Cicer arietinum L. HOM05D000641 ORTHO05D009503 1.2e-07 60.8 171 38.6
Lj3g0012958 Lotus japonicus HOM05D000641 ORTHO05D009503 1.2e-07 60.8 177 34.5
Potri.001G126000 Populus trichocarpa HOM05D000641 ORTHO05D009503 2.0e-07 60.1 133 38.3
TAR375G0077 Trochodendron aralioides HOM05D000641 ORTHO05D009503 2.7e-07 59.7 155 37.4
ClCG09G013070 Citrullus lanatus HOM05D000641 ORTHO05D009503 3.5e-07 59.3 156 35.3
ECA232G0602 Erigeron canadensis HOM05D000641 ORTHO05D009503 3.5e-07 59.3 92 40.2
Psat5g228240 Pisum sativum HOM05D000641 ORTHO05D009503 7.8e-07 58.2 164 37.2
Cc02_g04410 Coffea canephora HOM05D000641 ORTHO05D009503 1.0e-06 57.8 122 40.2
PSO561G0075 Papaver somniferum HOM05D000641 ORTHO05D009503 1.0e-06 57.8 102 35.3
Thecc.03G153400 Theobroma cacao HOM05D000641 ORTHO05D009503 1.0e-06 57.8 174 30.5
BcaC09g50799 Brassica carinata HOM05D001514 ORTHO05D002956 1.3e-06 57.4 76 46.1
arahy.Tifrunner.gnm1.ann1.S24B42 Arachis hypogaea HOM05D000641 ORTHO05D009503 1.7e-06 57.0 178 30.3
EL10Ac3g05858 Beta vulgaris HOM05D000641 ORTHO05D009503 1.7e-06 57.0 163 31.9
Gorai.001G049400 Gossypium raimondii HOM05D000641 ORTHO05D009503 1.7e-06 57.0 112 37.5
TPR.G12185 Trifolium pratense HOM05D000641 ORTHO05D009503 2.3e-06 56.6 167 37.7
Sabra01G0097000 Salix brachista HOM05D000641 ORTHO05D009503 3.9e-06 55.8 149 32.2
Gohir.D07G046200 Gossypium hirsutum HOM05D000641 ORTHO05D009503 5.0e-06 55.5 112 36.6
Lalb_Chr18g0048911 Lupinus albus HOM05D000641 ORTHO05D009503 5.0e-06 55.5 171 33.9
Sc19g0002090 Simmondsia chinensis HOM05D000641 ORTHO05D009503 5.0e-06 55.5 87 44.8
PGSC0003DMG400007216 Solanum tuberosum HOM05D000641 ORTHO05D009503 5.0e-06 55.5 86 41.9
Sopen05g030110 Solanum pennellii HOM05D000641 ORTHO05D009503 8.6e-06 54.7 86 45.3


User provided reference genes

Program Settings