Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 2.2e-102 375.6 183 100.0
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 7.3e-77 290.8 164 86.6
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 2.1e-68 262.7 155 80.0
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 2.0e-66 256.1 155 77.4
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 2.6e-66 255.8 155 78.1
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 3.4e-66 255.4 155 77.4
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 4.4e-66 255.0 155 77.4
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 5.8e-66 254.6 154 77.9
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 1.3e-65 253.4 155 76.1
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 1.3e-65 253.4 155 77.4
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 1.3e-65 253.4 155 77.4
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 1.7e-65 253.1 155 76.8
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 2.2e-65 252.7 155 76.8
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 3.7e-65 251.9 155 77.4
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 3.7e-65 251.9 154 77.3
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 3.7e-65 251.9 155 76.1
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 3.7e-65 251.9 155 76.1
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 4.9e-65 251.5 155 75.5
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 6.4e-65 251.1 154 75.3
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 6.4e-65 251.1 155 75.5
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 6.4e-65 251.1 155 75.5
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 6.4e-65 251.1 154 75.3
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 8.3e-65 250.8 155 76.8
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 1.1e-64 250.4 155 76.1
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 1.1e-64 250.4 155 74.8
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 1.1e-64 250.4 155 75.5
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 1.1e-64 250.4 155 74.2
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 1.4e-64 250.0 155 76.1
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 2.4e-64 249.2 155 76.1
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 2.4e-64 249.2 155 75.5
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 4.1e-64 248.4 155 76.1
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 4.1e-64 248.4 155 75.5
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 7.0e-64 247.7 154 76.0
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 9.2e-64 247.3 155 76.1
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 2.0e-63 246.1 155 74.2
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.0e-63 246.1 155 75.5
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 2.0e-63 246.1 155 75.5
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 2.0e-63 246.1 154 74.0
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 2.7e-63 245.7 155 74.8
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 6.0e-63 244.6 155 73.5
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 1.3e-62 243.4 155 73.5
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 1.7e-62 243.0 163 71.2
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 1.7e-62 243.0 155 72.9
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 3.0e-62 242.3 155 72.9
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 3.9e-62 241.9 155 74.2
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 3.9e-62 241.9 155 74.2
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 3.9e-62 241.9 155 72.9
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 6.6e-62 241.1 155 72.9
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 6.6e-62 241.1 155 72.9
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 6.6e-62 241.1 154 72.1
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 8.6e-62 240.7 173 68.2
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 8.6e-62 240.7 155 72.9
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 1.1e-61 240.4 147 76.2
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 1.1e-61 240.4 147 76.2
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 1.9e-61 239.6 165 69.7
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 2.5e-61 239.2 155 72.3
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 2.5e-61 239.2 147 75.5
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 3.3e-61 238.8 155 72.9
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 3.3e-61 238.8 147 75.5
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 7.3e-61 237.7 147 74.8
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 9.5e-61 237.3 147 76.2
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 1.6e-60 236.5 147 74.8
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 3.6e-60 235.3 147 74.8
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 8.1e-60 234.2 155 69.7
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 8.1e-60 234.2 160 71.9
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 1.4e-59 233.4 155 70.3
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 4.0e-59 231.9 165 68.5
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 6.8e-59 231.1 147 73.5
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 8.9e-59 230.7 147 73.5
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 8.9e-59 230.7 155 67.7
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 1.5e-58 229.9 147 74.1
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 2.6e-58 229.2 147 73.5
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 72.8
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 4.4e-58 228.4 147 73.5
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 5.8e-58 228.0 159 71.7
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 1.3e-57 226.9 147 71.4
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 1.3e-57 226.9 154 68.8
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 2.9e-57 225.7 154 68.2
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 4.9e-57 224.9 155 67.1
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 4.1e-56 221.9 198 57.1
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 7.1e-56 221.1 143 74.8
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 7.1e-56 221.1 155 67.7
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 1.6e-55 219.9 161 64.6
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 2.1e-55 219.5 147 69.4
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 2.7e-55 219.2 147 67.3
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 2.7e-55 219.2 154 68.8
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 3.5e-55 218.8 130 79.2
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 3.0e-54 215.7 149 66.4
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 8.1e-52 207.6 230 50.4
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 8.1e-52 207.6 155 65.8
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 4.9e-49 198.4 154 58.4
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 1.2e-47 193.7 131 72.5
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 1.3e-46 190.3 117 78.6
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 4.0e-43 178.7 126 69.8
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 3.4e-34 149.1 158 46.8
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 3.7e-28 129.0 163 42.9
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 1.1e-27 127.5 145 42.1
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 1.4e-27 127.1 147 46.3
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 6.4e-25 118.2 76 72.4
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 1.3e-20 104.0 106 50.0
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 1.2e-15 87.4 57 70.2
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 2.7e-15 86.3 59 67.8
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 3.0e-14 82.8 52 73.1
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 4.8e-12 75.5 48 68.8
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 9.4e-08 61.2 42 69.0
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 1.6e-07 60.5 35 65.7
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 3.9e-06 55.8 35 65.7


User provided reference genes

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