Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00705 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.2e-42 175.3 89 100.0
Eucgr.A00697 Eucalyptus grandis HOM05D003281 ORTHO05D004128 4.0e-28 127.9 69 94.2
Eucgr.L01257 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.8e-26 121.7 87 73.6
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 9.1e-25 116.7 70 85.7
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 1.2e-24 116.3 70 84.3
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 2.0e-24 115.5 70 84.3
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 2.7e-24 115.2 70 82.9
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 3.5e-24 114.8 70 81.4
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 4.5e-24 114.4 73 79.5
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 4.5e-24 114.4 73 79.5
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 4.5e-24 114.4 70 82.9
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 5.9e-24 114.0 70 82.9
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 5.9e-24 114.0 70 81.4
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 5.9e-24 114.0 70 81.4
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 5.9e-24 114.0 70 81.4
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 5.9e-24 114.0 70 81.4
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 82.9
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 7.7e-24 113.6 70 81.4
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.0e-23 113.2 65 86.2
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.0e-23 113.2 70 81.4
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 1.0e-23 113.2 70 81.4
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.0e-23 113.2 70 81.4
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 1.3e-23 112.8 70 81.4
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.3e-23 112.8 70 81.4
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 1.3e-23 112.8 81 74.1
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 1.3e-23 112.8 70 81.4
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 1.7e-23 112.5 65 84.6
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 1.7e-23 112.5 70 80.0
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 2.2e-23 112.1 70 81.4
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.9e-23 111.7 70 81.4
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 2.9e-23 111.7 65 86.2
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 2.9e-23 111.7 70 80.0
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 2.9e-23 111.7 68 82.4
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 3.8e-23 111.3 79 70.9
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 3.8e-23 111.3 65 84.6
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 3.8e-23 111.3 65 84.6
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 3.8e-23 111.3 65 84.6
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 3.8e-23 111.3 70 80.0
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 3.8e-23 111.3 70 80.0
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 3.8e-23 111.3 70 81.4
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 5.0e-23 110.9 70 80.0
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 5.0e-23 110.9 70 81.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 5.0e-23 110.9 70 80.0
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 5.0e-23 110.9 65 84.6
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 5.0e-23 110.9 70 80.0
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 6.5e-23 110.5 70 80.0
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 6.5e-23 110.5 70 80.0
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 6.5e-23 110.5 70 80.0
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 6.5e-23 110.5 70 80.0
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 8.5e-23 110.2 65 84.6
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 8.5e-23 110.2 65 84.6
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 8.5e-23 110.2 65 84.6
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 8.5e-23 110.2 70 78.6
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 8.5e-23 110.2 70 78.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.1e-22 109.8 70 77.1
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.1e-22 109.8 73 76.7
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.1e-22 109.8 70 78.6
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 1.1e-22 109.8 70 80.0
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.5e-22 109.4 63 85.7
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.5e-22 109.4 70 80.0
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 1.5e-22 109.4 65 83.1
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-22 109.4 65 83.1
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.5e-22 109.4 65 83.1
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.5e-22 109.4 65 83.1
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 1.5e-22 109.4 70 77.1
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 1.5e-22 109.4 70 77.1
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.5e-22 109.4 70 78.6
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.9e-22 109.0 70 77.1
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 86.2
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 1.9e-22 109.0 65 83.1
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 2.5e-22 108.6 65 84.6
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.5e-22 108.6 65 84.6
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.5e-22 108.6 65 84.6
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 2.5e-22 108.6 65 83.1
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 2.5e-22 108.6 65 83.1
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.2e-22 108.2 70 78.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 3.2e-22 108.2 65 83.1
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 4.2e-22 107.8 70 77.1
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 5.5e-22 107.5 65 83.1
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 7.2e-22 107.1 65 81.5
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 7.2e-22 107.1 65 81.5
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 9.4e-22 106.7 70 74.3
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 9.4e-22 106.7 70 78.6
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 1.6e-21 105.9 70 77.1
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 1.6e-21 105.9 65 80.0
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.6e-21 105.9 70 75.7
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.1e-21 105.5 65 80.0
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.1e-21 105.5 65 83.1
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 2.7e-21 105.1 65 80.0
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 2.7e-21 105.1 70 77.1
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 2.7e-21 105.1 65 81.5
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 3.6e-21 104.8 65 80.0
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 8.0e-21 103.6 68 75.0
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 1.0e-20 103.2 65 81.5
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.4e-20 102.8 70 72.9
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 6.8e-20 100.5 70 72.9
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.5e-19 99.4 70 71.4
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 5.7e-19 97.4 65 69.2
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 5.7e-19 97.4 65 69.2
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.7e-19 97.4 65 69.2
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 5.7e-19 97.4 70 71.4
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 7.5e-19 97.1 70 70.0
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 9.8e-19 96.7 70 68.6
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 1.3e-18 96.3 65 67.7
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.7e-18 95.9 68 69.1
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 6.3e-18 94.0 68 66.2
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.4e-17 92.8 70 67.1
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 1.8e-17 92.4 70 64.3
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.4e-17 92.0 57 82.5
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 5.4e-17 90.9 71 67.6
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 7.0e-17 90.5 68 64.7
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 2.7e-16 88.6 70 61.4
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 8.6e-15 83.6 65 64.6
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 1.5e-14 82.8 65 66.2
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 4.2e-14 81.3 79 53.2
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 4.2e-14 81.3 65 61.5
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 1.6e-13 79.3 61 62.3
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.0e-11 72.4 48 77.1
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.2e-10 68.9 62 64.5
AL1G45500 Arabidopsis lyrata HOM05D003023 ORTHO05D003412 1.4e-09 66.2 52 61.5
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 7.0e-09 63.9 46 69.6
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.9e-06 55.8 51 62.7
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 5.6e-06 54.3 33 81.8
MD12G1088900 Malus domestica HOM05D003281 ORTHO05D004128 7.3e-06 53.9 36 72.2


User provided reference genes

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