Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00652 Eucalyptus grandis HOM05D006888 ORTHO05D008371 9.8e-43 178.7 167 100.0
Thecc.05G322900 Theobroma cacao HOM05D006888 ORTHO05D008371 2.7e-24 117.5 165 58.2
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 4.0e-20 103.6 163 58.3
THA.LOC104820294 Tarenaya hassleriana HOM05D006888 ORTHO05D008371 5.3e-20 103.2 165 58.8
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 4.9e-18 96.7 63 68.3
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 1.1e-17 95.5 63 68.3
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.4e-17 95.1 63 68.3
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 2.4e-17 94.4 63 68.3
ClCG00G002450 Citrullus lanatus HOM05D006888 ORTHO05D008371 3.2e-17 94.0 62 71.0
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 7.1e-17 92.8 62 69.4
PGR083G0380 Punica granatum HOM05D006888 ORTHO05D008371 1.6e-16 91.7 61 67.2
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 1.6e-16 91.7 63 65.1
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 3.5e-16 90.5 166 54.2
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 3.5e-16 90.5 62 69.4
FAN19G0192 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.5e-16 90.5 167 69.5
FAN28G0085 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.5e-16 90.5 167 69.5
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 3.5e-16 90.5 63 63.5
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 4.6e-16 90.1 164 54.3
FvH4_1g12100 Fragaria vesca HOM05D006888 ORTHO05D008371 6.0e-16 89.7 62 66.1
FAN19G1999 Fragaria x ananassa HOM05D006888 ORTHO05D008371 6.0e-16 89.7 62 66.1
Gohir.A11G273300 Gossypium hirsutum HOM05D006888 ORTHO05D008371 6.0e-16 89.7 63 66.7
MD02G1110600 Malus domestica HOM05D006888 ORTHO05D008371 7.9e-16 89.4 63 63.5
Manes.03G083400 Manihot esculenta HOM05D006888 ORTHO05D008371 1.0e-15 89.0 62 64.5
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.0e-15 89.0 63 66.7
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.3e-15 88.6 63 61.9
CANSAT54G0476 Cannabis sativa HOM05D006888 ORTHO05D008371 1.7e-15 88.2 63 61.9
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 1.7e-15 88.2 63 63.5
FAN23G2816 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.3e-15 87.8 62 67.7
Gohir.D11G283400 Gossypium hirsutum HOM05D006888 ORTHO05D008371 3.0e-15 87.4 63 63.5
Gorai.007G306300 Gossypium raimondii HOM05D006888 ORTHO05D008371 3.0e-15 87.4 63 63.5
TWI56G0663 Tripterygium wilfordii HOM05D006888 ORTHO05D008371 3.0e-15 87.4 63 61.9
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 3.9e-15 87.0 62 61.3
Lj5A334T57 Lonicera japonica HOM05D006888 ORTHO05D008371 5.1e-15 86.7 58 63.8
Sabra05G0011500 Salix brachista HOM05D006888 ORTHO05D008371 5.1e-15 86.7 63 63.5
Potri.005G014500 Populus trichocarpa HOM05D006888 ORTHO05D008371 1.1e-14 85.5 63 60.3
RcHm_v2.0_Chr2g0099761 Rosa chinensis HOM05D006888 ORTHO05D008371 1.9e-14 84.7 63 61.9
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.3e-14 84.0 63 63.5
CSS0014440 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 4.3e-14 83.6 63 60.3
CSS0050387 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 4.3e-14 83.6 63 60.3
Hma1.2p1_0052F.1_g030800 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 4.3e-14 83.6 63 58.7
Hma1.2p1_0472F.1_g160001 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 4.3e-14 83.6 63 58.7
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 5.6e-14 83.2 63 61.9
FAN26G0552 Fragaria x ananassa HOM05D006888 ORTHO05D008371 5.6e-14 83.2 62 64.5
Hma1.2p1_0472F.1_g160010 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 5.6e-14 83.2 63 58.7
Hma1.2p1_0472F.1_g160023 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 5.6e-14 83.2 63 58.7
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 9.6e-14 82.4 63 57.1
Ciclev10003346m.g Citrus clementina HOM05D006888 ORTHO05D008371 1.3e-13 82.0 63 63.5
Psat5g190440 Pisum sativum HOM05D006888 ORTHO05D008371 2.1e-13 81.3 63 57.1
Psat5g190520 Pisum sativum HOM05D006888 ORTHO05D008371 2.1e-13 81.3 63 57.1
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 2.8e-13 80.9 63 58.7
Medtr4g108060 Medicago truncatula HOM05D006888 ORTHO05D008371 2.8e-13 80.9 62 59.7
Aqoxy3G04232 Aquilegia oxysepala HOM05D006888 ORTHO05D008371 6.2e-13 79.7 63 58.7
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 6.2e-13 79.7 63 58.7
Medtr4g074390 Medicago truncatula HOM05D006888 ORTHO05D008371 6.2e-13 79.7 62 59.7
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 6.2e-13 79.7 63 55.6
TPR.G21561 Trifolium pratense HOM05D006888 ORTHO05D008371 8.1e-13 79.3 63 55.6
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 1.1e-12 79.0 63 61.9
Lj3g0005449 Lotus japonicus HOM05D006888 ORTHO05D008371 1.1e-12 79.0 63 55.6
Oeu064824.1 Olea europaea HOM05D006888 ORTHO05D008371 1.1e-12 79.0 63 58.7
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 1.4e-12 78.6 63 60.3
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 1.4e-12 78.6 63 55.6
Atru.BG.136.p Acer truncatum HOM05D006888 ORTHO05D008371 1.8e-12 78.2 63 60.3
Migut.K00794 Erythranthe guttata HOM05D006888 ORTHO05D008371 1.8e-12 78.2 62 53.2
vmacro01561 Vaccinium macrocarpon HOM05D006888 ORTHO05D008371 1.8e-12 78.2 161 38.5
Aa31LG1G5110 Aethionema arabicum HOM05D006888 ORTHO05D008371 2.4e-12 77.8 63 55.6
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 2.4e-12 77.8 63 55.6
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 2.4e-12 77.8 63 54.0
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 4.0e-12 77.0 63 58.7
Psat5g177360 Pisum sativum HOM05D006888 ORTHO05D008371 4.0e-12 77.0 63 55.6
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 4.0e-12 77.0 63 60.3
Solyc01g100450.1 Solanum lycopersicum HOM05D006888 ORTHO05D008371 5.3e-12 76.6 63 57.1
PGSC0003DMG400002802 Solanum tuberosum HOM05D006888 ORTHO05D008371 5.3e-12 76.6 63 57.1
Actinidia35523 Actinidia chinensis HOM05D006888 ORTHO05D008371 6.9e-12 76.3 63 55.6
arahy.Tifrunner.gnm1.ann1.8HC1KC Arachis hypogaea HOM05D006888 ORTHO05D008371 6.9e-12 76.3 63 54.0
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.5e-11 75.1 63 58.7
CAN.G1715.1 Capsicum annuum HOM05D006888 ORTHO05D008371 2.0e-11 74.7 62 58.1
Nitab4.5_0004873g0030 Nicotiana tabacum HOM05D006888 ORTHO05D008371 2.0e-11 74.7 63 55.6
SGA_v2.0_scaffold5G02782 Striga asiatica HOM05D006888 ORTHO05D008371 2.0e-11 74.7 63 50.8
Ca_03033_v3 Cicer arietinum L. HOM05D006888 ORTHO05D008371 2.6e-11 74.3 62 53.2
Sopen01g043970 Solanum pennellii HOM05D006888 ORTHO05D008371 2.6e-11 74.3 63 55.6
VMungo1215G1495 Vigna mungo HOM05D006888 ORTHO05D008371 3.4e-11 73.9 62 50.0
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 4.5e-11 73.6 62 56.5
arahy.Tifrunner.gnm1.ann1.8QK61L Arachis hypogaea HOM05D006888 ORTHO05D008371 4.5e-11 73.6 63 52.4
CiPaw.08G155700 Carya illinoinensis HOM05D006888 ORTHO05D008371 5.8e-11 73.2 46 67.4
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 5.8e-11 73.2 63 52.4
Nitab4.5_0000368g0090 Nicotiana tabacum HOM05D006888 ORTHO05D008371 5.8e-11 73.2 59 57.6
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 7.6e-11 72.8 162 56.8
SalBow3G0195 Salvia bowleyana HOM05D006888 ORTHO05D008371 7.6e-11 72.8 61 50.8
DCAR_005421 Daucus carota HOM05D006888 ORTHO05D008371 1.3e-10 72.0 63 52.4
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 1.7e-10 71.6 63 55.6
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 1.7e-10 71.6 63 55.6
Phvul.002G058500 Phaseolus vulgaris HOM05D006888 ORTHO05D008371 2.2e-10 71.2 63 50.8
Cc02_g35010 Coffea canephora HOM05D006888 ORTHO05D008371 2.9e-10 70.9 62 45.2
HanXRQChr02g0059161 Helianthus annuus HOM05D006888 ORTHO05D008371 3.8e-10 70.5 63 54.0
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 4.9e-10 70.1 63 54.0
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 6.4e-10 69.7 63 54.0
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 1.1e-09 68.9 63 50.8
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 1.4e-09 68.6 62 50.0
Glyma.11G103200 Glycine max HOM05D006888 ORTHO05D008371 2.4e-09 67.8 63 49.2
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 2.4e-09 67.8 62 50.0
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 5.4e-09 66.6 63 50.8
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.3e-07 62.0 144 51.4
TAR362G0873 Trochodendron aralioides HOM05D006888 ORTHO05D008371 1.3e-07 62.0 45 60.0
Peaxi162Scf00673g00033 Petunia axillaris HOM05D006888 ORTHO05D008371 1.8e-07 61.6 44 59.1
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 2.5e-06 57.8 61 45.9
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.5e-06 57.8 51 51.0


User provided reference genes

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