Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-60 235.7 120 100.0
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.2e-43 179.9 118 76.3
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.1e-41 173.3 121 76.9
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 8.2e-37 157.1 88 84.1
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-36 156.8 90 81.1
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.8e-36 156.0 118 66.9
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 5.3e-36 154.5 119 63.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.2e-35 153.3 91 81.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.2e-35 153.3 121 69.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.5e-35 152.9 120 66.7
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 2.0e-35 152.5 121 69.4
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.6e-35 152.1 99 76.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.6e-35 152.1 118 65.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.6e-35 152.1 99 76.8
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.5e-35 151.8 119 64.7
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.5e-35 151.4 88 79.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.5e-35 151.4 88 79.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.5e-35 151.4 88 79.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.9e-35 151.0 89 75.3
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.9e-35 151.0 121 68.6
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.9e-35 151.0 118 64.4
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 7.7e-35 150.6 93 76.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.7e-35 150.6 118 65.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.0e-34 150.2 105 70.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.0e-34 150.2 116 68.1
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.3e-34 149.8 88 79.5
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.3e-34 149.8 89 74.2
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.3e-34 149.8 118 66.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.7e-34 149.4 91 79.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.7e-34 149.4 121 66.9
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 2.2e-34 149.1 95 73.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.2e-34 149.1 88 79.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.2e-34 149.1 119 65.5
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.9e-34 148.7 120 66.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.8e-34 148.3 117 65.8
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.8e-34 148.3 88 78.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.8e-34 148.3 103 72.8
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 3.8e-34 148.3 88 78.4
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.0e-34 147.9 87 80.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.5e-34 147.5 108 65.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.5e-34 147.5 119 64.7
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 8.5e-34 147.1 86 81.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 8.5e-34 147.1 86 81.4
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 8.5e-34 147.1 90 81.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 8.5e-34 147.1 88 77.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-33 146.7 117 66.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.1e-33 146.7 92 73.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-33 146.4 118 62.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.4e-33 146.4 102 72.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.9e-33 146.0 109 68.8
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.9e-33 146.0 98 73.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.5e-33 145.6 93 73.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-33 145.6 106 65.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.5e-33 145.6 116 65.5
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.2e-33 145.2 93 73.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.2e-33 145.2 93 73.1
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.2e-33 145.2 93 73.1
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.2e-33 145.2 119 65.5
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 4.2e-33 144.8 90 74.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.2e-33 144.8 93 73.1
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 7.2e-33 144.1 120 64.2
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 9.4e-33 143.7 80 83.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 9.4e-33 143.7 117 64.1
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.4e-33 143.7 97 72.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-32 143.3 87 77.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-32 143.3 87 77.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-32 143.3 109 68.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.2e-32 143.3 112 65.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-32 143.3 118 63.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-32 143.3 118 63.6
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.1e-32 142.5 88 77.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.7e-32 142.1 88 78.4
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-32 141.7 118 61.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.6e-32 141.7 116 67.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.6e-32 141.7 93 73.1
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.6e-32 141.7 118 63.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.7e-32 141.4 90 73.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.0e-31 140.2 120 62.5
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.0e-31 140.2 89 73.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.8e-31 139.4 118 61.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.8e-31 139.4 88 73.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.3e-31 139.0 82 79.3
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.3e-31 139.0 118 61.9
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.0e-31 138.7 108 67.6
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.9e-31 138.3 121 62.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.7e-31 137.5 108 66.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.7e-31 137.5 120 57.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 6.7e-31 137.5 86 73.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 61.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 91 73.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-30 136.3 119 60.5
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.5e-30 136.3 86 73.3
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-30 136.0 87 75.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.3e-30 135.2 108 66.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.3e-30 135.2 118 60.2
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.3e-30 135.2 118 60.2
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.3e-30 135.2 118 60.2
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.4e-30 134.8 152 51.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 4.4e-30 134.8 118 60.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 4.4e-30 134.8 118 59.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.7e-30 134.4 109 63.3
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.4e-30 134.0 108 62.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.4e-30 134.0 118 60.2
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.4e-30 134.0 147 53.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.3e-29 133.3 118 57.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.7e-29 132.9 165 46.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.2e-29 132.5 115 62.6
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.2e-29 132.5 162 51.9
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.8e-29 132.1 117 58.1
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.7e-29 131.7 107 60.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.7e-29 131.7 87 72.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 3.7e-29 131.7 88 73.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.1e-28 130.2 108 62.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.4e-28 129.8 118 60.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.8e-28 129.4 121 57.9
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.6e-27 126.3 108 60.2
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-27 125.9 84 69.0
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.6e-27 125.6 107 56.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.6e-27 125.6 79 72.2
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.0e-26 123.6 78 75.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.8e-26 121.7 84 67.9
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.5e-25 119.8 118 51.7
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.2e-25 118.6 91 63.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.1e-24 115.9 72 75.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.1e-24 115.9 78 67.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.1e-24 115.9 80 67.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 8.0e-24 114.0 104 58.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.0e-23 111.7 79 64.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 5.2e-23 111.3 91 60.4
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.3e-21 106.7 65 78.5
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.8e-21 104.8 83 67.5
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 6.3e-21 104.4 78 61.5
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.3e-21 104.0 98 59.2
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.1e-20 103.6 94 55.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.8e-20 102.8 67 74.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.1e-20 102.1 87 62.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.1e-20 101.7 77 67.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 5.3e-20 101.3 102 55.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.0e-20 100.9 84 64.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.0e-20 100.9 84 64.3
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.9e-18 95.5 64 73.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.2e-17 92.0 61 78.7
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 7.2e-17 90.9 91 54.9
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 7.2e-17 90.9 83 51.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 2.7e-16 89.0 71 54.9
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 8.0e-16 87.4 72 52.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-15 86.3 74 59.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.3e-15 85.9 51 76.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-15 85.5 72 59.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-15 85.5 72 59.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.0e-14 82.8 51 78.4
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.4e-14 81.6 98 46.9
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.1e-12 77.0 54 66.7
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.7e-11 72.4 93 43.0
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.5e-11 72.0 97 42.3
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-10 69.7 51 68.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-08 63.5 50 68.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-08 62.8 63 57.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.8e-07 59.7 74 43.2
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 6.8e-07 57.8 72 44.4
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.0e-06 56.2 65 41.5
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.0e-06 56.2 65 41.5


User provided reference genes

Program Settings