Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00630 Eucalyptus grandis HOM05D004253 ORTHO05D005013 5.4e-226 787.3 402 100.0
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.5e-193 678.3 503 74.4
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.1e-141 507.3 499 57.5
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.1e-138 497.3 482 57.7
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 4.7e-121 438.7 490 50.6
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 2.3e-120 436.4 504 49.4
FAN14G5304 Fragaria x ananassa HOM05D004253 ORTHO05D005013 3.1e-120 436.0 438 54.1
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 5.8e-119 431.8 498 49.8
Cfa017100 Carpinus fangiana HOM05D004253 ORTHO05D005013 1.3e-118 430.6 485 51.1
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 2.9e-118 429.5 497 50.7
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 1.2e-116 424.1 515 49.5
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 2.1e-116 423.3 486 49.4
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 6.0e-116 421.8 501 48.5
Sabra16G0129900 Salix brachista HOM05D004253 ORTHO05D005013 6.0e-116 421.8 510 47.3
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 7.8e-116 421.4 486 49.4
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.0e-115 421.0 496 49.4
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 2.3e-115 419.9 478 50.6
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 5.1e-115 418.7 496 48.2
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 6.6e-115 418.3 496 49.2
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 6.6e-115 418.3 490 49.4
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 8.6e-115 417.9 495 49.3
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 8.6e-115 417.9 482 48.5
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 1.9e-114 416.8 499 49.5
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 5.6e-114 415.2 502 49.2
Haze_21100 Corylus avellana HOM05D004253 ORTHO05D005013 1.2e-113 414.1 492 49.4
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 1.6e-113 413.7 510 46.7
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 2.1e-113 413.3 483 49.5
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 4.7e-113 412.1 497 47.5
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 1.1e-112 411.0 491 49.5
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 1.4e-112 410.6 491 49.1
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 1.8e-112 410.2 492 48.8
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 2.4e-112 409.8 470 51.3
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 3.1e-112 409.5 487 49.7
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 5.2e-112 408.7 469 48.6
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 5.2e-112 408.7 491 49.1
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 3.4e-111 406.0 493 49.7
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 3.4e-111 406.0 477 49.7
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 1.7e-110 403.7 472 50.0
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 4.9e-110 402.1 551 44.5
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 1.1e-109 401.0 493 47.9
Duzib177G0173 Durio zibethinus HOM05D004253 ORTHO05D005013 1.4e-109 400.6 493 48.7
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 3.2e-109 399.4 481 48.4
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 4.2e-109 399.1 470 48.9
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 4.2e-109 399.1 496 48.2
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 7.1e-109 398.3 496 48.4
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 1.2e-108 397.5 492 48.2
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.7e-108 396.4 481 48.2
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 3.5e-108 396.0 455 49.9
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 4.6e-108 395.6 488 46.7
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 7.8e-108 394.8 502 46.6
Lj3g0025170 Lotus japonicus HOM05D004253 ORTHO05D005013 7.8e-108 394.8 489 46.4
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 7.8e-108 394.8 480 47.5
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 3.9e-107 392.5 494 47.0
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.5e-106 390.6 483 48.0
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 1.9e-106 390.2 491 45.8
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 2.1e-105 386.7 503 47.1
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 2.1e-105 386.7 487 45.6
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 2.1e-105 386.7 487 47.6
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 3.6e-105 386.0 489 46.0
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 4.8e-105 385.6 495 46.9
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 6.2e-105 385.2 483 47.6
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 1.1e-104 384.4 482 45.2
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 1.4e-104 384.0 458 50.0
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 3.1e-104 382.9 467 49.0
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 4.0e-104 382.5 478 45.8
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 9.0e-104 381.3 495 44.4
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 1.5e-103 380.6 500 45.4
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 5.8e-103 378.6 488 47.7
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 7.6e-103 378.3 479 46.8
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 7.6e-103 378.3 483 46.0
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 2.2e-102 376.7 478 46.0
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 2.2e-102 376.7 495 45.7
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 3.8e-102 375.9 478 46.2
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 3.8e-102 375.9 494 45.1
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 4.9e-102 375.6 478 46.2
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 6.4e-102 375.2 492 45.9
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 8.4e-102 374.8 471 46.7
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 1.4e-101 374.0 495 44.8
Duzib093G0769 Durio zibethinus HOM05D004253 ORTHO05D005013 1.4e-101 374.0 459 49.2
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea HOM05D004253 ORTHO05D005013 7.1e-101 371.7 521 44.0
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 7.1e-101 371.7 485 45.4
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 7.1e-101 371.7 486 45.1
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 7.1e-101 371.7 496 46.0
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 9.3e-101 371.3 486 45.7
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 2.7e-100 369.8 483 45.1
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 3.5e-100 369.4 497 44.3
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 4.6e-100 369.0 471 46.1
TWI74G0689 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 6.0e-100 368.6 453 48.8
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 1.0e-99 367.9 492 46.1
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 1.3e-99 367.5 510 46.3
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.8e-99 367.1 478 45.6
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 3.9e-99 365.9 481 44.9
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 3.9e-99 365.9 490 44.9
Glyma.01G128300 Glycine max HOM05D004253 ORTHO05D005013 8.7e-99 364.8 454 44.9
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 8.7e-99 364.8 486 45.7
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 1.1e-98 364.4 493 45.0
AUR62026347 Chenopodium quinoa HOM05D004253 ORTHO05D005013 1.5e-98 364.0 470 46.8
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.5e-98 364.0 496 43.5
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 2.5e-98 363.2 472 46.6
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 4.3e-98 362.5 500 44.6
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 7.4e-98 361.7 440 47.5
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 1.6e-97 360.5 455 46.2
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 4.8e-97 359.0 487 44.4
Manes.09G113000 Manihot esculenta HOM05D004253 ORTHO05D005013 4.8e-97 359.0 477 45.3
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 5.3e-96 355.5 455 46.8
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 9.0e-96 354.8 470 44.7
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 1.5e-95 354.0 492 44.7
CDE04G3038 Ceratophyllum demersum HOM05D004253 ORTHO05D005013 4.5e-95 352.4 474 44.7
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea HOM05D004253 ORTHO05D005013 7.1e-93 345.1 454 46.3
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 2.1e-92 343.6 408 48.5
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 3.5e-92 342.8 476 42.9
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 8.7e-91 338.2 448 45.8
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 1.9e-90 337.0 517 43.3
Lj3C944T3 Lonicera japonica HOM05D004253 ORTHO05D005013 1.3e-89 334.3 384 49.5
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.6e-89 334.0 452 43.1
TPR.G5208 Trifolium pratense HOM05D004253 ORTHO05D005013 4.0e-88 329.3 452 45.4
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 5.3e-88 328.9 442 43.9
Medtr4g013245 Medicago truncatula HOM05D004253 ORTHO05D005013 9.0e-88 328.2 489 42.1
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 5.8e-87 325.5 482 41.9
AUR62006302 Chenopodium quinoa HOM05D004253 ORTHO05D005013 1.0e-86 324.7 448 45.5
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 6.5e-86 322.0 452 43.8
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 1.1e-85 321.2 420 46.4
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 2.5e-85 320.1 388 49.7
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 2.5e-85 320.1 471 43.3
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 3.3e-82 309.7 405 47.2
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 2.6e-79 300.1 408 44.9
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 1.4e-77 294.3 421 41.8
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 1.9e-77 293.9 447 40.0
Ca_27544_v3 Cicer arietinum L. HOM05D004253 ORTHO05D005013 1.3e-75 287.7 408 43.6
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 3.0e-75 286.6 414 43.7
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 4.8e-73 279.3 437 41.6
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.4e-72 277.7 433 41.8
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 5.0e-70 269.2 347 46.7
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 5.7e-66 255.8 494 37.7
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 7.4e-66 255.4 471 38.4
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 2.6e-63 246.9 484 33.9
SalBow5G5570 Salvia bowleyana HOM05D004253 ORTHO05D005013 1.1e-61 241.5 372 41.4
Potri.016G128500 Populus trichocarpa HOM05D004253 ORTHO05D005013 5.5e-61 239.2 275 48.7
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 3.0e-59 233.4 408 37.7
BolC4t22497H Brassica oleracea HOM05D004253 ORTHO05D005013 3.9e-59 233.0 306 44.1
C04p09080 Brassica napus HOM05D004253 ORTHO05D005013 2.6e-58 230.3 304 45.1
HanXRQChr10g0287841 Helianthus annuus HOM05D004253 ORTHO05D005013 5.5e-53 212.6 278 46.0
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 6.1e-52 209.1 477 33.1
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 1.0e-51 208.4 300 43.3
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 1.4e-51 208.0 448 33.9
EL10Ac7g16784 Beta vulgaris HOM05D004253 ORTHO05D005013 2.6e-50 203.8 331 39.3
EL10As8g23831 Beta vulgaris HOM05D004253 ORTHO05D005013 2.6e-50 203.8 331 39.3
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 4.4e-50 203.0 330 38.5
Cpa.g.sc5.254 Carica papaya HOM05D004253 ORTHO05D005013 2.2e-46 190.7 267 43.4
BolC7t44561H Brassica oleracea HOM05D004253 ORTHO05D005013 1.8e-40 171.0 127 66.9
BcaNung02099 Brassica carinata HOM05D004253 ORTHO05D005013 5.4e-40 169.5 123 68.3
C07p40260 Brassica napus HOM05D004253 ORTHO05D005013 9.1e-40 168.7 123 67.5
HanXRQChr10g0287851 Helianthus annuus HOM05D004253 ORTHO05D005013 5.0e-38 162.9 155 56.8
SEGI_11914 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 6.8e-35 152.5 124 58.9
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 2.8e-33 147.1 459 29.0
Glyma.03G042500 Glycine max HOM05D004253 ORTHO05D005013 1.7e-25 121.3 96 60.4
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 6.2e-20 102.8 204 34.8
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 1.4e-19 101.7 184 37.5
RcHm_v2.0_Chr3g0461431 Rosa chinensis HOM05D004253 ORTHO05D005013 2.9e-17 94.0 86 58.1
CBR_g42060 Chara braunii HOM05D004253 ORTHO05D005013 9.2e-16 89.0 97 44.3
TPR.G5249 Trifolium pratense HOM05D004253 ORTHO05D005013 3.0e-14 84.0 70 57.1
Cfa024502 Carpinus fangiana HOM05D004253 ORTHO05D005013 1.0e-06 58.9 269 24.2
Cre16.g687000 Chlamydomonas reinhardtii HOM05D004253 ORTHO05D005013 6.6e-06 56.2 86 37.2
PSO266G0027 Papaver somniferum HOM05D004253 ORTHO05D005013 8.6e-06 55.8 44 63.6


User provided reference genes

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