Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00563 Eucalyptus grandis HOM05D003123 ORTHO05D003492 4.7e-114 414.5 199 100.0
Eucgr.A00588 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.1e-46 190.7 109 85.3
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.1e-45 186.4 136 70.6
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.4e-44 183.7 103 86.4
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 6.7e-44 181.4 109 83.5
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.9e-39 166.0 109 77.1
Eucgr.A00559 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.5e-38 163.7 109 78.0
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.2e-31 139.8 135 59.3
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 2.5e-30 136.3 114 59.6
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 4.2e-30 135.6 110 60.0
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 2.8e-29 132.9 141 50.4
Dinv22133 Davidia involucrata HOM05D003123 ORTHO05D003492 3.6e-29 132.5 111 59.5
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 4.7e-29 132.1 110 60.9
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 4.7e-29 132.1 110 60.9
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 6.1e-29 131.7 111 59.5
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 8.0e-29 131.3 110 59.1
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 8.0e-29 131.3 110 59.1
Gohir.A05G273300 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.0e-28 131.0 110 58.2
Prupe.7G229900 Prunus persica HOM05D003123 ORTHO05D003492 1.0e-28 131.0 111 59.5
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.4e-28 130.6 110 58.2
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 1.4e-28 130.6 114 57.0
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 2.3e-28 129.8 110 59.1
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 2.3e-28 129.8 110 58.2
Cpa.g.sc66.19 Carica papaya HOM05D003123 ORTHO05D003492 3.0e-28 129.4 111 55.9
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 3.0e-28 129.4 110 58.2
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 3.0e-28 129.4 111 57.7
Carub.0002s1883 Capsella rubella HOM05D003123 ORTHO05D003492 4.0e-28 129.0 111 56.8
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 56.4
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 55.5
MSTRG.26188 Avicennia marina HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 57.3
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 56.4
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 56.4
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 56.4
THA.LOC104800122 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 5.2e-28 128.6 110 56.4
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 6.8e-28 128.3 118 54.2
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 6.8e-28 128.3 111 56.8
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 6.8e-28 128.3 110 56.4
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 6.8e-28 128.3 110 59.1
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 8.8e-28 127.9 109 58.7
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 1.5e-27 127.1 110 56.4
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 1.5e-27 127.1 110 55.5
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 1.5e-27 127.1 110 55.5
CARHR064870 Cardamine hirsuta HOM05D003123 ORTHO05D003492 1.5e-27 127.1 111 55.9
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 1.5e-27 127.1 110 57.3
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 2.0e-27 126.7 107 57.9
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 2.0e-27 126.7 103 61.2
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 2.0e-27 126.7 114 57.9
AL2G31680 Arabidopsis lyrata HOM05D003123 ORTHO05D003492 2.6e-27 126.3 110 56.4
Cfa020349 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.6e-27 126.3 110 58.2
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 2.6e-27 126.3 113 54.9
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 3.4e-27 125.9 110 56.4
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 3.4e-27 125.9 114 55.3
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 3.4e-27 125.9 110 58.2
PSO339G1610 Papaver somniferum HOM05D003123 ORTHO05D003492 3.4e-27 125.9 110 56.4
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 4.4e-27 125.6 114 56.1
A07p30420 Brassica napus HOM05D003123 ORTHO05D003492 5.7e-27 125.2 110 55.5
BraA07t30679Z Brassica rapa HOM05D003123 ORTHO05D003492 5.7e-27 125.2 110 55.5
RcHm_v2.0_Chr2g0090581 Rosa chinensis HOM05D003123 ORTHO05D003492 7.5e-27 124.8 110 58.2
Ca_12615_v3 Cicer arietinum L. HOM05D003123 ORTHO05D003492 9.8e-27 124.4 111 55.0
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 9.8e-27 124.4 114 55.3
AT1G72050 Arabidopsis thaliana HOM05D003123 ORTHO05D003492 1.3e-26 124.0 110 54.5
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 1.3e-26 124.0 113 54.0
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 1.3e-26 124.0 111 57.7
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.7e-26 123.6 110 57.3
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 1.7e-26 123.6 113 54.9
CiPaw.04G106900 Carya illinoinensis HOM05D003123 ORTHO05D003492 2.2e-26 123.2 110 55.5
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 4.9e-26 122.1 113 54.9
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 6.3e-26 121.7 110 54.5
Sp3g26870 Schrenkiella parvula HOM05D003123 ORTHO05D003492 8.3e-26 121.3 110 53.6
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 8.3e-26 121.3 109 54.1
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.1e-25 120.9 110 56.4
FAN07G0209 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.1e-25 120.9 110 54.5
Aqoxy6G01455 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 1.4e-25 120.6 111 54.1
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 1.8e-25 120.2 110 52.7
Phvul.005G025300 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 1.8e-25 120.2 111 54.1
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 1.8e-25 120.2 109 55.0
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 2.4e-25 119.8 111 55.0
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.4e-25 119.8 110 54.5
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 3.1e-25 119.4 110 53.6
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 3.1e-25 119.4 120 52.5
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 4.1e-25 119.0 111 52.3
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 5.4e-25 118.6 102 59.8
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 7.0e-25 118.2 110 53.6
Glyma.02G292900 Glycine max HOM05D003123 ORTHO05D003492 7.0e-25 118.2 109 54.1
Psat5g221680 Pisum sativum HOM05D003123 ORTHO05D003492 7.0e-25 118.2 111 55.0
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 7.0e-25 118.2 111 50.5
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 9.2e-25 117.9 110 53.6
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 9.2e-25 117.9 108 55.6
Sopen10g028790 Solanum pennellii HOM05D003123 ORTHO05D003492 9.2e-25 117.9 114 52.6
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 1.2e-24 117.5 109 53.2
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.0e-24 116.7 110 53.6
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 2.0e-24 116.7 109 54.1
Aqoxy3G03721 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 2.7e-24 116.3 110 50.9
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.7e-24 116.3 110 54.5
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 3.5e-24 115.9 114 54.4
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.5e-24 115.9 110 54.5
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 3.5e-24 115.9 107 53.3
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 3.5e-24 115.9 103 56.3
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.5e-24 115.5 110 52.7
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 4.5e-24 115.5 114 50.9
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 5.9e-24 115.2 111 51.4
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 5.9e-24 115.2 110 52.7
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 5.9e-24 115.2 110 52.7
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 7.8e-24 114.8 111 49.5
Rhsim06G0030700 Rhododendron simsii HOM05D003123 ORTHO05D003492 1.0e-23 114.4 124 50.8
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 1.3e-23 114.0 109 53.2
FvH4_4g26190 Fragaria vesca HOM05D003123 ORTHO05D003492 2.3e-23 113.2 110 51.8
Cfa020344 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.9e-23 112.8 110 54.5
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 2.9e-23 112.8 109 51.4
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 2.9e-23 112.8 110 50.9
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 3.8e-23 112.5 110 52.7
RcHm_v2.0_Chr7g0228771 Rosa chinensis HOM05D003123 ORTHO05D003492 5.0e-23 112.1 109 54.1
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 1.1e-22 110.9 139 46.0
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 1.5e-22 110.5 94 54.3
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.5e-22 110.5 104 55.8
CsaV3_5G036840 Cucumis sativus L. HOM05D003123 ORTHO05D003492 1.9e-22 110.2 112 50.0
Aa31LG4G8580 Aethionema arabicum HOM05D003123 ORTHO05D003492 3.3e-22 109.4 110 50.0
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 3.3e-22 109.4 114 49.1
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 3.3e-22 109.4 139 45.3
ECA234G4206 Erigeron canadensis HOM05D001066 ORTHO05D000891 5.6e-22 108.6 109 51.4
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 7.3e-22 108.2 114 49.1
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 9.5e-22 107.8 139 43.9
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 1.6e-21 107.1 112 50.0
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 2.1e-21 106.7 104 53.8
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 2.8e-21 106.3 117 48.7
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 2.8e-21 106.3 125 45.6
Gohir.D05G275700 Gossypium hirsutum HOM05D003123 ORTHO05D003492 2.8e-21 106.3 107 50.5
MD15G1186600 Malus domestica HOM05D003123 ORTHO05D003492 3.6e-21 105.9 110 50.0
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 3.6e-21 105.9 103 51.5
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 4.7e-21 105.5 111 46.8
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.7e-21 105.5 110 47.3
MELO3C012480.2 Cucumis melo HOM05D003123 ORTHO05D003492 4.7e-21 105.5 111 48.6
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 4.7e-21 105.5 102 54.9
Nitab4.5_0020143g0020 Nicotiana tabacum HOM05D003123 ORTHO05D003492 6.1e-21 105.1 103 52.4
Peaxi162Scf00538g00233 Petunia axillaris HOM05D000722 ORTHO05D003492 6.1e-21 105.1 99 54.5
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 1.0e-20 104.4 111 49.5
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 1.8e-20 103.6 92 57.6
RcHm_v2.0_Chr7g0228721 Rosa chinensis HOM05D003123 ORTHO05D003492 3.0e-20 102.8 98 55.1
Hund19062 Selenicereus undatus HOM05D003123 ORTHO05D003492 3.0e-20 102.8 102 52.0
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.0e-20 102.4 110 47.3
Sed0001197 Sechium edule HOM05D003123 ORTHO05D003492 4.0e-20 102.4 110 48.2
Zm00001eb265630 Zea mays HOM05D003123 ORTHO05D003492 5.2e-20 102.1 104 52.9
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 6.8e-20 101.7 111 47.7
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 6.8e-20 101.7 98 52.0
RcHm_v2.0_Chr2g0120581 Rosa chinensis HOM05D003123 ORTHO05D003492 8.9e-20 101.3 84 58.3
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 2.0e-19 100.1 114 45.6
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 2.0e-19 100.1 107 49.5
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 2.6e-19 99.8 113 46.9
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.6e-19 99.8 122 45.9
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 3.4e-19 99.4 118 44.1
EL10Ac3g07342 Beta vulgaris HOM05D003123 ORTHO05D003492 1.3e-18 97.4 114 45.6
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 1.3e-18 97.4 93 53.8
unitig_0.g2667 Utricularia gibba HOM05D003123 ORTHO05D003492 1.7e-18 97.1 99 48.5
VMungo1080G1725 Vigna mungo HOM05D003123 ORTHO05D003492 1.7e-18 97.1 100 48.0
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 2.2e-18 96.7 92 53.3
Zm00001eb353990 Zea mays HOM05D003123 ORTHO05D003492 8.3e-18 94.7 110 44.5
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 1.4e-17 94.0 83 55.4
Lalb_Chr04g0264151 Lupinus albus HOM05D003123 ORTHO05D003492 1.8e-17 93.6 111 45.0
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 5.4e-17 92.0 109 45.0
Hma1.2p1_0278F.1_g111890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 2.0e-16 90.1 94 51.1
ATR1136G200 Amborella trichopoda HOM05D003123 ORTHO05D003492 2.7e-16 89.7 101 45.5
ClCG10G021960 Citrullus lanatus HOM05D003123 ORTHO05D003492 3.5e-16 89.4 110 40.9
HPP92_013255 Vanilla planifolia HOM05D003123 ORTHO05D003492 5.9e-16 88.6 109 41.3
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 7.8e-16 88.2 106 44.3
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 1.0e-15 87.8 104 43.3
Haze_09687 Corylus avellana HOM05D003123 ORTHO05D003492 3.0e-15 86.3 83 50.6
HPP92_013244 Vanilla planifolia HOM05D003123 ORTHO05D003492 5.0e-15 85.5 109 40.4
RcHm_v2.0_Chr5g0055971 Rosa chinensis HOM05D003123 ORTHO05D003492 1.9e-14 83.6 110 45.5
HPP92_013254 Vanilla planifolia HOM05D003123 ORTHO05D003492 2.8e-13 79.7 110 40.9
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 8.9e-12 74.7 79 48.1
SEGI_28277 Sequoiadendron giganteum HOM05D003123 ORTHO05D003492 6.4e-10 68.6 62 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4391 Anthoceros agrestis HOM05D003123 ORTHO05D003492 1.3e-07 60.8 108 35.2
Eucgr.A00576 Eucalyptus grandis HOM05D003123 ORTHO05D003492 8.6e-07 58.2 47 63.8
Lj1A24G68 Lonicera japonica HOM05D003123 ORTHO05D003492 2.5e-06 56.6 108 34.3


User provided reference genes

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