Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1705.3 864 100.0
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1468.4 867 85.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 835 82.3
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 835 82.9
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1349.0 816 83.6
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1347.0 835 81.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 819 82.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 836 82.5
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 817 83.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 836 82.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 838 81.3
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 836 81.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 835 82.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 836 81.7
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 836 81.5
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 799 83.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 819 82.5
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 819 82.5
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 820 83.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 819 82.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 837 81.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 837 81.5
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1328.5 837 81.4
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 835 80.7
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 838 80.3
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 837 81.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 823 81.2
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 838 81.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 836 80.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 817 81.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 848 79.2
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 816 82.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 863 78.7
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 812 81.4
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 834 80.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 836 79.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 836 79.9
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 849 78.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 819 81.2
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 836 80.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 824 80.1
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 863 79.0
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 823 80.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 816 80.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 885 76.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 846 79.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1297.0 816 80.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 813 81.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 819 80.5
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 811 80.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 816 81.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 807 81.0
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 835 79.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 837 79.0
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 858 78.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 838 79.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 863 78.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 865 78.2
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 851 73.9
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 842 79.6
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 845 78.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 781 81.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 816 81.0
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 817 79.4
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 813 79.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 844 77.3
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 814 79.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 819 79.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 813 79.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 844 77.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 813 80.2
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 816 78.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 832 80.2
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 836 77.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 817 80.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 816 79.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 816 79.4
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 816 79.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 828 79.3
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 873 74.9
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1256.1 820 77.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 819 77.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 813 78.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 857 76.5
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 809 78.4
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 819 78.9
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 840 77.7
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 810 77.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 815 79.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 874 75.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 821 78.8
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 844 75.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 819 77.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 838 77.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 832 78.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 817 79.3
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1236.1 766 83.2
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 842 77.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 842 77.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 842 77.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 842 77.1
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 814 77.5
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 838 77.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 819 78.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 819 78.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 819 78.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 845 75.3
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 821 76.7
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 834 75.8
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 821 72.6
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1226.1 812 76.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 823 78.5
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 813 77.2
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 859 72.6
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 780 81.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1218.0 816 76.1
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 834 75.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 836 77.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 836 76.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 815 77.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1208.7 817 76.1
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 816 75.9
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1204.5 820 77.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 821 75.9
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 818 75.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1177.5 779 75.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 854 72.5
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1166.8 761 77.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 835 73.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1159.1 819 74.1
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1157.1 817 73.8
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1157.1 879 69.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1150.2 777 75.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 689 83.2
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 811 75.3
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1132.1 832 69.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1123.6 768 73.7
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1120.1 819 70.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1096.3 806 70.1
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1094.0 724 79.7
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1085.5 806 70.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 3.9e-298 1028.1 815 68.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 6.7e-282 974.2 578 81.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.8e-272 942.2 650 68.6
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 4.0e-258 895.2 588 74.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.4e-255 886.7 518 82.8
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.3e-252 875.2 816 61.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.7e-248 862.1 533 83.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-177 626.7 709 52.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.7e-147 526.6 434 61.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.3e-136 490.7 307 76.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.5e-135 485.3 347 79.5
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.0e-108 397.9 315 74.3
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.9e-98 364.8 264 68.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.5e-95 354.4 397 51.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-83 314.3 584 43.7
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.9e-59 234.6 156 76.9
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 9.4e-50 203.0 128 78.1
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 4.4e-47 194.1 165 58.8
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 7.2e-34 150.2 475 28.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.7e-31 140.6 473 26.8
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.7e-30 137.9 76 81.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.3e-30 137.1 458 27.3
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.9e-26 125.6 421 28.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.2e-26 123.6 96 66.7
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.2e-26 123.6 470 27.9
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-25 122.5 68 82.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.6e-25 121.3 108 55.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-17 94.7 266 28.9
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-16 91.7 220 32.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.3e-14 86.3 55 72.7
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.0e-12 79.0 89 48.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.0e-12 79.0 132 38.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-08 65.1 70 45.7
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 2.9e-06 58.5 107 33.6
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 3.7e-06 58.2 38 71.1


User provided reference genes

Program Settings