Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 9.1e-157 557.0 306 100.0
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-128 462.2 284 86.3
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-128 462.2 284 86.3
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 6.8e-128 461.1 306 82.7
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 8.9e-128 460.7 284 85.9
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 1.5e-127 459.9 288 85.4
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 4.4e-127 458.4 306 82.0
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 5.7e-127 458.0 306 81.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 9.8e-127 457.2 306 81.4
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.3e-126 456.8 306 81.7
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.3e-126 456.8 282 84.8
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.7e-126 456.4 306 81.0
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.7e-126 456.4 280 84.6
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.7e-126 455.3 294 82.0
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 1.1e-125 453.8 306 81.4
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 9.2e-125 450.7 296 81.4
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 1.6e-124 449.9 300 81.0
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.0e-123 447.2 306 79.4
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.3e-123 446.0 283 82.0
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 2.3e-123 446.0 290 81.4
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.3e-123 446.0 290 81.4
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 6.6e-123 444.5 306 79.1
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.6e-123 444.1 282 81.2
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.1e-122 443.7 283 81.6
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.5e-122 442.6 295 79.3
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 5.6e-122 441.4 284 81.0
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 9.5e-122 440.7 282 83.0
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 9.5e-122 440.7 282 82.3
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 9.5e-122 440.7 289 80.6
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.2e-121 440.3 282 82.3
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.6e-121 438.7 280 82.1
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 4.7e-121 438.3 290 78.6
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 6.1e-121 438.0 294 78.9
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.0e-120 437.2 298 79.9
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.0e-120 437.2 284 80.3
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 5.2e-120 434.9 306 78.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.8e-120 434.5 284 79.9
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 6.8e-120 434.5 282 81.6
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.2e-119 433.7 282 80.5
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 1.2e-119 433.7 302 77.8
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.5e-119 433.3 306 77.5
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 2.0e-119 433.0 296 77.7
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.4e-119 432.2 302 77.5
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 4.4e-119 431.8 285 80.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 5.8e-119 431.4 282 79.8
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 5.8e-119 431.4 292 79.1
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 9.8e-119 430.6 291 79.4
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.8e-119 430.6 265 86.0
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.3e-118 430.3 282 79.8
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.7e-118 429.9 300 76.3
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.7e-118 429.9 286 80.8
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.2e-118 429.5 306 76.8
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.2e-118 429.5 306 75.5
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.2e-118 429.5 306 75.5
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 2.9e-118 429.1 283 80.2
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 2.9e-118 429.1 306 76.8
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-118 429.1 266 85.3
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.7e-118 428.7 265 85.7
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 8.3e-118 427.6 282 79.8
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 8.3e-118 427.6 312 73.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.1e-117 427.2 280 80.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.1e-117 427.2 306 76.8
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.4e-117 426.8 283 79.5
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-117 426.8 285 81.4
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.4e-117 426.8 306 75.2
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.9e-117 426.4 291 78.4
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.4e-117 426.0 303 74.9
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 3.2e-117 425.6 283 79.5
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.2e-117 425.6 308 76.3
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 1.2e-116 423.7 316 73.7
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.2e-116 423.7 293 77.5
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.0e-116 422.9 291 77.7
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.0e-116 422.9 289 79.2
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-116 422.9 306 75.2
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.0e-116 422.9 281 79.4
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.7e-116 422.5 289 79.2
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.7e-116 422.5 306 73.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 3.5e-116 422.2 286 77.6
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.0e-116 421.4 312 74.0
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 7.8e-116 421.0 286 78.3
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 7.8e-116 421.0 282 78.4
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.0e-115 420.6 306 73.9
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-115 419.9 281 77.9
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.3e-115 419.5 291 78.0
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 3.0e-115 419.1 303 74.6
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 6.6e-115 417.9 285 76.8
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 8.6e-115 417.5 281 78.6
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.1e-114 417.2 304 73.4
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 2.5e-114 416.0 286 77.3
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.5e-114 416.0 286 76.9
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 4.3e-114 415.2 318 72.6
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 4.3e-114 415.2 306 73.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 9.5e-114 414.1 279 78.5
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.2e-113 413.7 281 77.6
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-113 413.7 281 77.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.6e-113 413.3 283 78.1
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.7e-113 411.8 281 77.9
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.1e-112 410.6 281 77.2
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 1.1e-112 410.6 279 77.8
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.4e-112 410.2 272 79.4
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.8e-112 409.8 296 75.3
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 5.2e-112 408.3 298 73.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.2e-112 408.3 266 83.5
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 6.8e-112 407.9 283 77.4
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 8.9e-112 407.5 351 65.5
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 8.9e-112 407.5 283 77.0
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 4.4e-111 405.2 282 76.6
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 5.8e-111 404.8 282 76.6
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-110 402.5 284 78.5
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.0e-107 394.0 224 98.7
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 3.0e-107 392.5 279 73.8
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.9e-107 392.1 278 74.1
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-106 390.6 265 81.5
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.6e-106 388.3 289 70.6
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 9.5e-106 387.5 344 65.4
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.3e-104 382.9 278 72.3
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 5.8e-103 378.3 284 73.2
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.7e-102 375.6 233 84.1
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.9e-101 373.2 260 76.2
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.6e-100 370.2 305 66.2
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.0e-99 367.5 282 70.9
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.6e-99 364.8 280 70.4
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 8.6e-99 364.4 288 69.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.1e-98 364.0 295 66.1
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.6e-97 360.1 306 66.7
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 3.6e-97 359.0 294 65.0
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.2e-95 354.0 298 64.1
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 5.8e-95 351.7 284 65.8
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.9e-94 349.4 292 62.0
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.4e-93 347.1 212 85.8
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.5e-87 327.0 303 64.7
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 7.6e-87 324.7 281 58.7
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.5e-79 300.4 296 58.8
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 7.6e-79 298.1 267 62.5
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 9.9e-79 297.7 303 55.1
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 3.7e-73 279.3 199 72.9
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.3e-70 270.8 163 82.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 7.1e-69 265.0 252 60.3
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.2e-68 264.2 214 65.9
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 4.6e-68 262.3 287 53.7
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.8e-63 245.4 205 69.3
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.5e-58 229.9 163 73.6
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 4.2e-53 212.6 264 44.3
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.8e-43 180.6 169 61.5
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 5.7e-42 175.6 185 54.6
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 5.7e-42 175.6 185 54.6
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 1.3e-38 164.5 107 76.6
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 1.3e-38 164.5 107 76.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 3.1e-32 143.3 96 75.0
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 9.1e-32 141.7 82 85.4
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.2e-31 141.4 139 61.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 4.2e-29 132.9 94 70.2
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.7e-22 110.9 82 64.6
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 1.2e-20 104.8 101 63.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.7e-17 94.4 83 63.9
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.1e-16 89.7 52 90.4
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 5.4e-16 89.4 58 79.3
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 3.5e-15 86.7 76 61.8
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.6e-14 82.4 70 71.4
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.1e-13 81.6 78 57.7
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 5.5e-13 79.3 67 62.7
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 2.1e-12 77.4 67 62.7
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 4.7e-12 76.3 116 42.2
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 6.1e-12 75.9 83 51.8
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.0e-11 75.1 112 46.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 4.0e-11 73.2 59 59.3
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 1.3e-09 68.2 93 45.2
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 4.9e-09 66.2 40 77.5
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 3.2e-08 63.5 39 76.9
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 3.2e-08 63.5 39 76.9
BcaB01g01563 Brassica carinata HOM05D004217 ORTHO05D094843 8.6e-06 55.5 46 63.0


User provided reference genes

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