Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 0.0e+00 1250.3 628 100.0
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.0e-276 954.5 628 78.2
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 5.8e-275 950.7 581 82.1
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.2e-273 944.9 624 77.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.7e-272 941.8 595 80.5
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.5e-272 941.4 578 82.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.6e-272 941.0 631 77.7
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.7e-271 939.1 599 79.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.0e-271 938.3 597 80.2
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.2e-269 932.9 571 82.3
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.8e-269 931.8 631 76.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.8e-268 929.1 593 79.8
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.4e-268 928.7 576 81.8
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-267 926.0 595 78.8
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 2.6e-267 925.2 595 78.8
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 5.8e-267 924.1 588 79.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.8e-267 924.1 579 80.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.8e-267 924.1 579 80.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.8e-267 924.1 606 77.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.8e-266 921.4 571 81.3
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.4e-266 920.2 621 76.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.4e-265 919.5 603 78.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.9e-265 919.1 579 80.3
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.9e-265 919.1 599 78.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 5.4e-265 917.5 579 80.1
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.3e-265 916.8 595 78.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.6e-264 916.0 579 80.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.7e-264 915.2 626 75.9
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.5e-264 914.8 596 77.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.3e-263 912.9 629 76.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.3e-263 912.1 626 75.1
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.5e-262 909.4 570 80.2
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-262 909.4 602 77.6
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.5e-262 908.7 622 75.2
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 4.3e-262 907.9 586 78.0
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.6e-262 907.5 576 79.5
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.1e-261 905.6 603 78.4
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.1e-261 905.6 597 78.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.8e-261 905.2 623 75.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.1e-261 903.7 595 77.3
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.8e-260 902.5 628 75.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.6e-259 898.7 586 78.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.4e-257 891.0 552 81.3
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.7e-256 888.6 582 78.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.6e-256 887.9 578 77.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.8e-255 885.9 548 81.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.3e-255 885.6 574 77.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 5.1e-255 884.4 574 79.3
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.7e-255 884.0 582 77.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.5e-254 882.9 583 77.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.1e-253 879.0 597 76.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.1e-253 879.0 578 77.3
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.1e-253 879.0 569 78.4
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.4e-252 876.3 582 77.3
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.8e-252 875.9 569 77.9
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.8e-252 875.9 578 77.0
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.4e-252 875.5 597 76.2
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.4e-252 875.5 571 77.6
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.1e-252 875.2 606 74.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 3.1e-252 875.2 620 73.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 9.9e-251 870.2 635 72.4
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.3e-250 869.8 573 77.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.3e-250 869.8 578 76.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 4.9e-250 867.8 598 74.4
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 4.9e-250 867.8 578 76.1
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 8.4e-250 867.1 571 77.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 8.4e-250 867.1 635 72.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 5.5e-249 864.4 564 78.2
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.0e-247 860.1 557 78.6
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.8e-247 859.4 571 76.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.8e-247 859.4 593 74.5
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.9e-247 858.2 571 76.9
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.9e-246 855.9 571 77.1
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.8e-245 852.0 612 72.1
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 4.8e-245 851.3 596 74.5
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-244 849.7 584 74.7
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.8e-244 849.4 559 78.9
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.9e-244 847.4 558 77.4
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 7.6e-243 844.0 579 73.6
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.3e-242 843.2 570 75.1
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.7e-242 842.8 520 80.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.5e-242 840.9 632 70.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 8.4e-242 840.5 597 72.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.2e-241 838.2 573 74.7
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 5.5e-241 837.8 610 70.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.9e-240 833.9 594 72.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.0e-239 833.6 664 67.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.8e-239 832.8 590 73.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.2e-237 825.9 572 73.6
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.8e-237 825.5 581 71.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.1e-236 821.6 580 73.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.4e-235 818.5 572 73.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.4e-235 818.5 570 73.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.5e-235 818.1 572 72.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.2e-234 815.8 573 72.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.9e-234 815.5 573 72.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 5.0e-234 814.7 574 73.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 6.5e-234 814.3 572 72.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.4e-233 813.1 588 71.9
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.4e-233 813.1 552 74.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.2e-233 812.0 616 70.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.6e-232 809.7 520 78.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.1e-232 809.3 578 71.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.1e-232 809.3 578 71.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.0e-231 805.4 580 71.0
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.1e-231 804.7 578 72.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.1e-230 803.5 577 71.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-230 803.5 548 73.9
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.3e-230 801.6 594 70.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.7e-230 801.2 566 72.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 7.4e-230 800.8 581 69.9
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.8e-229 798.1 538 74.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 5.3e-228 794.7 536 74.4
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 5.3e-228 794.7 536 74.4
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 9.1e-228 793.9 559 72.1
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.0e-226 790.4 556 72.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 9.7e-222 773.9 553 73.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.2e-221 772.7 622 68.5
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 8.2e-221 770.8 571 70.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.2e-219 766.9 535 74.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 9.4e-217 757.3 543 73.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-214 749.6 533 70.9
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.6e-214 749.2 575 68.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.6e-214 749.2 592 65.7
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.4e-214 748.4 479 78.3
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.7e-213 746.5 526 70.9
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.8e-212 743.0 536 69.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.1e-212 740.7 519 73.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-207 727.2 526 71.1
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.2e-205 719.5 582 66.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.1e-204 717.2 607 64.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.7e-202 709.9 419 84.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-202 709.9 597 64.8
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.9e-202 709.1 528 69.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.5e-202 707.6 577 66.2
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-200 702.6 589 64.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-199 700.3 600 63.8
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.2e-199 698.4 418 82.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-198 697.2 414 82.6
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-198 697.2 412 83.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.7e-192 675.2 527 67.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.2e-190 670.6 496 69.6
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 8.3e-189 664.5 513 68.0
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 8.6e-186 654.4 537 64.6
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.0e-170 602.8 427 75.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 8.3e-165 584.7 548 55.8
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.1e-160 570.1 379 74.7
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.4e-158 562.4 478 60.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.8e-152 543.1 534 57.1
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.9e-141 506.5 330 79.1
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.3e-137 492.7 335 76.7
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.3e-135 485.7 457 57.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 7.2e-108 395.6 239 80.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 9.5e-76 288.9 157 89.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 8.9e-66 255.8 145 87.6
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 8.1e-51 206.1 163 62.6
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.4e-49 200.7 163 60.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 8.3e-48 196.1 160 60.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 5.4e-47 193.4 160 59.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.7e-40 171.8 131 65.6
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 7.8e-38 162.9 98 80.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.5e-28 132.1 94 71.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.1e-26 124.4 94 67.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 4.2e-23 114.0 115 54.8
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-21 109.0 312 28.5
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-21 108.2 275 30.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.8e-19 101.3 60 83.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-18 98.2 223 30.5
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.0e-18 97.4 217 34.1
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.5e-17 95.5 123 43.9
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.5e-14 84.3 86 52.3
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.8e-13 82.0 70 68.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 5.1e-13 80.5 100 48.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-12 77.0 74 60.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-07 62.8 73 52.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.1e-06 58.5 54 50.0


User provided reference genes

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